Scaffold Ga0209401

Basic Information
Taxon OID	3300027971 Open in IMG/M
Scaffold ID	Ga0209401_1005643 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027971 Open in IMG/M

Scaffold ID

Ga0209401_1005643 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7543
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (95.65%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

7543

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (95.65%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F013279	Metagenome / Metatranscriptome	272	Y
F018135	Metagenome	236	Y
F020167	Metagenome	225	Y
F037113	Metagenome / Metatranscriptome	168	Y
F038999	Metagenome	164	Y
F075748	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100564312	F003212	AGGAG	MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIESHWKGRVLPTSEGESNE
Ga0209401_100564314	F075748	GAGG	MNKQEILSIIDSTQSFNAFIEGIDTINGQSLGLVIDVAGVDGQDWTDEECLDTIKEIVDLTNAYKNTHDWSD
Ga0209401_100564316	F020167	GAGG	METINELVNEIYEDNYSHLELNDAMGGDCDCIVHNTLNTIVKYWHEREGE
Ga0209401_100564318	F018135	AGG	MTIETLRHSGAYVMSALAGKGGGEYLFTRTYYGYTLKQAKAQFRIALEGEGK
Ga0209401_100564320	F038999	GGAG	MTKELEQGTKLSFPCSCNGCRNYPTRPAEIWHESQIASKAQGYFFTKDTMRFFNSRIADFKPVGISPRGVDSLMVIVSNKRDNDPRYYEIVTLCPYGELGREWATDSEGEPITNYASLYKARKSARWNCTIAAQLCDCHGCQLDKAGR
Ga0209401_10056434	F013279	AGGCGG	MQYDYRCPDCNTVLTIERSIHENPREPSCFDCHVTMVRKWDSPAITFKGKGFYTNGG
Ga0209401_10056436	F003863	GGAGG	MESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIISSDSKLTVTTHTRANAVPDVAGRTDYESSDESYNGGEA
Ga0209401_10056438	F000821	GAGG	MNEEYLRAKVDLCLNQAEIDLQQEEIARAIKNLERANSALSRLFGLQEEENE
Ga0209401_10056439	F037113	GGAGG	MSKWTVWVGAYEVNWQHYAYKIDADRVAEFYREVKGYDDVIVKEVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209401_1005643

Overview

Ecosystem & Geography

Associated Families

Sequences