Scaffold Ga0209401_1000320

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000320
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32925
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (68.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F042872	Metagenome	157	Y
F048158	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100032010	F016963	GGAGG	VIEILPEQSTHEQLLNRVRSLARELAEAKSALAAAEGRENNLIERIRAGL
Ga0209401_100032018	F042872	N/A	MKLPIIINQIESGNCTVGSNPTPSEAYHYNDLSRNGNTAVITGPKKAHYQQLNLNSRGGYDLTPDAFVYHPNPAVCRMWAQQHEASK
Ga0209401_100032020	F026867	N/A	MSSVRLNDSAMKLRQENRALSLRQLGAAYGLGYVRIKQMQSLPGFPLIAGKVIPSDFDQWRLMQTGLSSLHRGDRLRSVVGKVHALESKSGSRVSWRQIANTLKDEAWLHELPARNENSD
Ga0209401_100032027	F031026	GGA	MRGGLNALLLISSLALCSCATTSQTQDGPPPSPDTISYFIYEWDKAERTNKPCPQAYRDLFAQSLKALSDCLAEVERERARK
Ga0209401_100032029	F006891	N/A	MSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVVSTAWELIKRRFSL
Ga0209401_10003204	F007747	AGGA	MKDLGKITFGKACPAPKQVLVDVTYDGKTAKALHAFGLKQLKKDKEAVIEYVIKKALEGLAKK
Ga0209401_100032054	F048158	AGTAG	MARPVNHDVKRAMAATGKSRATVYLQRKKAESQPLVKAKGGGLDVEIQRLEDLAASLGESAKDDTRADRSELISNYTKLVEALRRMKGDRPDIDQAEGTMVPVDEADKILAARDNALIPLLKGMAKRLAPICANRPAVEVEAEVENEVGQIMRQVEAAL
Ga0209401_10003209	F005502	AGG	MRALCNVVLTFLAFFGFPVTQASNVMIDLRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK