Scaffold Ga0209401

Basic Information
Taxon OID	3300027971 Open in IMG/M
Scaffold ID	Ga0209401_1000297 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027971 Open in IMG/M

Scaffold ID

Ga0209401_1000297 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34126
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (75.93%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34126

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (75.93%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	7
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F016963	Metagenome	243	N
F026867	Metagenome	196	Y
F042872	Metagenome	157	Y
F043823	Metagenome	155	N
F048834	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_100029729	F006891	AGCAG	VSADQVAELSERLALAREAIARIETRQTVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISF
Ga0209401_100029734	F048834	AGGAGG	VAIPTVKDWAVALDAYVAGDREEVVPPGWYTKIEISKQWGKSDVYTNKVLTRMIKAGGAERKVFSIKIKICNRGSKIGHCRRVPHYRLTPAKSRKS
Ga0209401_100029735	F043823	N/A	MTLMKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELEKEKRR
Ga0209401_100029737	F026867	GAG	MGLGRLNDIAMKLRQQDQALSLRQLGAAYGLGYVRIKQMQELSGFPLIAGKIIPSDFDQWRMMQTGLSSLHRASRPHSAVGKARALTSRSDSRVAWRQIENSLKAAVSSLGLPEANENND
Ga0209401_100029739	F042872	AGG	VGSNPTPSEAYGCNDLRRNGNTAVITEPKKKHYQQHSLLIRGGYPAEPAYHPNPSVARMWTAQR
Ga0209401_100029747	F016963	GAGG	VIEVLPEESIHEQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRGGL
Ga0209401_100029748	F005502	AGG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209401_1000297

Overview

Ecosystem & Geography

Associated Families

Sequences