Scaffold Ga0209401_1000068

Overview

Basic Information

• Taxon OID: 3300027971
• Scaffold ID: Ga0209401_1000068
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70638
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 87 (75.65%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Associated Families: 12

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014841	Metagenome / Metatranscriptome	259	Y
F019308	Metagenome	230	N
F020531	Metagenome	223	Y
F025725	Metagenome / Metatranscriptome	200	Y
F035280	Metagenome	172	Y
F036203	Metagenome	170	Y
F042308	Metagenome / Metatranscriptome	158	Y
F049581	Metagenome	146	Y
F057363	Metagenome / Metatranscriptome	136	Y
F058789	Metagenome / Metatranscriptome	134	N
F072277	Metagenome	121	Y
F096619	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209401_1000068100	F058789	N/A	MGSFTSKAPCRDADPWLFDQYNLDLVQPALNYCSRCIFWQECDSLVKPKVNFYDGVVAGKVWRNGRILAKLDASSPYRLIVGEENIAENYDALEVSGSELLGGTDGVLLP
Ga0209401_1000068113	F025725	N/A	MDGHNGLSKEKEVMPSVIDDTIQVLKSMGISSYRVSTPPGYAGIQVNLPNDSQAFFVWTKIDQTDFHFRLARFWANENPFSMWVSPNLIEALTKTRVLANQ
Ga0209401_100006817	F096619	AGGAG	MAINHAIVSVGSTATLLTVAASGGGKDGSTILIQNPAGGQAVFLGGAGVTSSSYGYKLAIDSNISIELNQDEAVYGVVASSTQSVAVLRQGV
Ga0209401_100006829	F019308	N/A	MAKSSFTLDLFGDQELVNALKAGAEDTPQAIAQAIYEEANVIFAKSQVLVPVDTGVLRGSGGVSAPQMGNTGYFVDIFYGGPAASYALYVHEIIGNYHNPPTQAKYLEQPVMEAMSTIQENIKGRIIDIIQKGHRN
Ga0209401_100006831	F036203	GAG	MAETQQPMSSNDAGNVTGSSSKVQRVHGVSDAQGVNPKINQDDFFKDLDSLVGSGRGQSGCSIGKLVADLDEPLRSKLNEIMRNEKVNSSRLGEVMLAYGLQVSSSDVLRRHRRRLIGKDGCKCPNES
Ga0209401_100006844	F057363	AGGAG	MDSKIKAMLASYGRSFLAAVTTAFMITGGDILALDGDALKAILAAGVSAVLPVAIRAANPKDPAFGKIADGVTEAVVKKIKAKKK
Ga0209401_100006851	F020531	AGGAG	MNNQQSEQLTLQKSSAMNLSDIAVLVGFIGIYDLRIQVDELKVRAWAESLDRDLTLEEAKTIVSWHYANFDTAITPSHINKELRRRMADSREQEKSRLMSLEWEQREKEKASPEVIAKWKKEFLDYMNRNRVEDAPLENDSDTVAPNP
Ga0209401_100006860	F035280	GAGG	MEKKIGKYWFNWGRTSGFALGFNISKYNWGIELGFWYVGMEF
Ga0209401_100006864	F042308	GGAGG	MGWDVTQVGSNITTYAFINYYIRRTYDGIYESVKIFEGKNENGQKAFYVALKKLEDNSVFACVILTQRKNGQVFSKVIGESEEPLYYEAPKSFIDVLTPASTYGGAWWRNRCLEKYLEKENA
Ga0209401_100006881	F049581	GGAG	MTKQEGRPFNEDELIDQIGRMNIFAVSGGRVNITKNNQGETVEVELPVGYGYRVSIKLDWNDTYIVSRQFVRKGVVTDKGTVDGIYCEEIGEVVYQASCFRNVEFGKAVA
Ga0209401_100006886	F072277	N/A	VESERRTDMKCVKCGVAVGKMEVFQSGVCLKCYAEEFEKEFQSALKIARLK
Ga0209401_100006898	F014841	N/A	MGSNEQKRPSAIDDALAEIGRIAFVEPAICTGWVLVSEWMGEGDKDYWTLTLADDQNPDWRHLGLVHHGLKNWEGDDDVGLRDK