Scaffold Ga0209191_1026534

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1026534
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2818
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F038106	Metagenome	166	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_102653410	F068426	N/A	LKSLQKGFEDYQPITELFVEQKLLCGYNIIKSKDQVYTA
Ga0209191_10265344	F083677	GAGG	MSDTFADMDVEELQSYFSDFHKDYYGFRPRFATPEQWQNRDWLVEHINAIHDAMDELKKTPEGRAELRANGWVIEEKETI
Ga0209191_10265348	F038106	AGGA	MKLSYQQKEFIMQEMFKMHKTPAGYRSIYKGVPIYNYEVIKEFIDFTKYYVMFRGPRPRLNQSSTRKRDAKAFDVYMRSNRDTLLIRTEREAFERGVQWANNRSH
Ga0209191_10265349	F006060	GAGG	MLKFEGIATVGDIIRAYDFKPMAGRDDAFIEGVVIDANNNESGFSSYKIKVTVDKFKKYETKVTARNRVEQIAFVPHQTSFHEFDFRVVNLSKV