Scaffold Ga0209191_1014985

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1014985
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3986
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033329	Metagenome	177	N
F085061	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_10149854	F033329	N/A	MSRDIYNSIEAINASSIKRHFTGSIQYAAGALERGAEFHRNLLETEPKDMPPNARVIYDAIIKHPMLRLVFEKSAKEITFIKEIEIDGRKVAAKGILDLHCPMYSINADIKTTSCKTLRAFASDMTKHYNHIQAVWYSYLTGYSPTNFYYIGVPNKFKGELFIHRHTTEEIDTAENLIREYLEHRGL
Ga0209191_10149858	F085061	N/A	MSPFDNIHHEFTQFNRYLDTIIDPRECDNDTMEAKVKEAIIQAYSNGYHDGQKAIIDRFPRPSSQGGEEGGREYYESL