Scaffold Ga0209191_1001632

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1001632
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14679
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001483	Metagenome / Metatranscriptome	686	Y
F009605	Metagenome / Metatranscriptome	315	Y
F016501	Metagenome / Metatranscriptome	246	Y
F068839	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100163216	F009605	AGGA	MKTIVNSIWSFLEAFGQARAAASLARQGRFEEAKAVYGA
Ga0209191_100163221	F068839	AGGA	MKLTSFIFVISVFASACVSAWTPSAEEVALSAKEDARELALFKLLALK
Ga0209191_100163223	F001483	AGGA	MDKLKEFLLELLKYIGESPFRLFTVVFLCIIGFGGWIVYSEKDAFMASYRAQQAMPKMNGKYEEAVNFILKNTDAELVAVFNVNTLLNTRKLAYLTTRGGGRDKAHDGTNVGLLTKNHSNNEDVIGLMSGKIPCGPYLTPQSYIGFTYKDAGVKYMCRISVPAEPGLFIGQISVGWKEQPTEVELAQTVMIVASSLLFDKK
Ga0209191_10016325	F016501	N/A	MRFFEFAGDATGDKFVMVLRNYIGRAASKKAPAKLNWSGLNKVLSTNGFELTADYETFKAMYDSSPAIQTMVKDFNQDGIELNVPGVPDETQPQGSGTAQPQDSQAAVDQTAASAAAGQLAASQATPQA