Scaffold Ga0209191_1000524

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000524
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29376
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (82.54%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Associated Families: 19

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000980	Metagenome / Metatranscriptome	814	Y
F002245	Metagenome / Metatranscriptome	578	Y
F002489	Metagenome / Metatranscriptome	554	Y
F003379	Metagenome / Metatranscriptome	490	Y
F005531	Metagenome / Metatranscriptome	397	Y
F005741	Metagenome / Metatranscriptome	391	Y
F007644	Metagenome / Metatranscriptome	347	Y
F011299	Metagenome / Metatranscriptome	292	Y
F017133	Metagenome / Metatranscriptome	242	Y
F017134	Metagenome / Metatranscriptome	242	Y
F030095	Metagenome / Metatranscriptome	186	N
F031497	Metagenome / Metatranscriptome	182	Y
F051930	Metagenome / Metatranscriptome	143	Y
F074872	Metagenome / Metatranscriptome	119	Y
F076101	Metagenome / Metatranscriptome	118	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100052410	F000852	AGGAG	MATKREYLKQQGIAVGVRGRFSGAAKVALAEAEAKGIKFTAETPAGKAK
Ga0209191_100052411	F000441	AGGAGG	MKMSDPYIDEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMEAIDQ
Ga0209191_100052414	F007644	GAGG	MVTKTSTFMEYMKLHLISLNQDLEMNPESINVIDIPGQIYATEHLMSVATDIMNSTNERY
Ga0209191_100052422	F000980	N/A	MTNYQKYTWICPGDCDALIEYTFKDGYGWPAGVMDLTCRCGTDCILLSVVDATITPSTTTKEEKMETTINEVPASYNSDLVVTYKVIRGYSDAEYATSKITSLEWDLHNGRQAQKQNNVLQDKINTAKDIIAEAYADSSDQDTLRSIAEALGIELTRTVEWTATIEVSGTIELDLLEDYDIEDEITDNLYVDSQSGRIEIADQEVCHVREC
Ga0209191_100052425	F005741	AGG	MANRFRVEIYDANKLNDVTIYSEQGVDKEYLTELVYSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEQTVNKYNLNLKQDTAKQLGLA
Ga0209191_100052427	F074872	AGG	MSDPYATILTYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALVGA
Ga0209191_100052429	F002245	AGG	MSNLMKVPHTIEFEAVIDLDKIPASLLPRLLTMDTSLITEMCKGATAHALAMSNTLTVANENNYWAELTIKENN
Ga0209191_100052432	F017134	AGG	MDNFTVACLNYEICGATTTFFDEAEYEIYGDDYMCAECYDSEEMEFYETAGWADSDALASAGHGMDEDY
Ga0209191_100052433	F011299	AGG	MTMTRKHFEAIAKILKYNSNKTHPAVFSKMVLDFAELCANENPNFNVNKFHEASGYVVPKFSSR
Ga0209191_100052434	F076101	GGAG	MYKLTLSYDGNAPHWQQDYESEFDAWKDFFAFVDWGFANEYSTVNLYNSEMKCFTRHFYREDRKVVTVK
Ga0209191_100052438	F085708	GGA	MNRLLTSLVQIAIGIPALYMGRIVLREIVSDFREWSKSH
Ga0209191_100052439	F005531	GGAG	MTITYSLWQGSQLLSVNNKASKPEEILAVIEELNKLGKGFTFNVREVDTSK
Ga0209191_100052440	F000447	GAGG	MGYIEIFRMNEEGAGWVDLADATPSELLDIEIGLLQEGAI
Ga0209191_100052442	F017133	AGGAG	MTNSMYERARGFASVSDYPKGMMNLCPCGQVVLAPSNYHEGFPWWDNPNQCKEMWDNSHS
Ga0209191_100052446	F003379	AGGA	MKKLYALVSTIAIAILSGVALSKFLNWAGTVEIFDFDLNENIDHEEF
Ga0209191_100052452	F002489	GAG	MQEDLNKEVSSNLEDNLPMVNYIMLHRMYDLLTLISNKIVGSEDTQKMIEYHEAGYLLGPAPSFTPGEEE
Ga0209191_100052454	F051930	AGGAG	MKIQYVSTYISMSEEGLVEKLLCPVDQSLLFCNQDLEDNISLYCLECEYKKNIGLSTYQNIVKLVEENINVQ
Ga0209191_100052458	F030095	AGG	VAAQKNFEVDQNTTFTFEVQYLDEDQTPIQLNHHTAKLQVRDTQGGKKLAFTLTENDGIVISPTEGKLKISISADRTNKMFYPKSAYDLILIDPSVNKTRLLEGYMTLSRSVTV
Ga0209191_10005249	F031497	GGAGG	MSKSPEIKVAEAIVNLTESHWFNPTVFGRYLAEQPHYTIDRIMEMVVSIISEQSKIHGRNNSTSEGLLLANELNECIKAYQENVQLNNLKLPSRSFKVPKREEPKTHTFGWRSEELDPFN