Scaffold Ga0209191_1000304

Overview

Basic Information

• Taxon OID: 3300027969
• Scaffold ID: Ga0209191_1000304
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38787
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (64.41%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002689	Metagenome / Metatranscriptome	536	Y
F002997	Metagenome / Metatranscriptome	514	Y
F043944	Metagenome	155	Y
F063624	Metagenome	129	Y
F095158	Metagenome	105	Y
F103232	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209191_100030415	F043944	N/A	MIFNGHTHDTLADIDDVTMSQLQTMYADGMVGNNGVLEVLGTLTAGVFNYMRTANSSPYKLANILGNAYDYIYPPLTEQDKKQAVNNSLLAFMTQAPGFQQDRFKHG
Ga0209191_100030417	F000934	GAG	MSLQAILSISESVGINDQRFVGQTISRNQKITTSEILTVVPFAFELKPMNYLLYSQNRGLLNTLRIPDKAITQYINFGSTGWVNYIKYQGDMTSAEISACQWQTSSAAKVLVLGSLPSISSGAYLFKIGDFVQVGLYSYIVTDNVLRGGAATVNVPVHRSLISALTSPVACVAGEYGTTVSMGGSTYTGVTFPVILREYPTYTLIPMTNDSFISWNGTFKAFESVL
Ga0209191_100030418	F002085	N/A	MNVIAPVDGTSSIRLADFVRVNTGTDIYRFTTAPSNTLVSAVDSTAFSAVGTLMKIGDVQRDIKSTANETTVTLIGIDTAMLGWVLGQSVKGSQIDMWHGFYNEANQLITTGGTGGLYQFFSGIITSFTISETWMEEARSYVGTITIAASAIQLILQNRIAGRYTNNNSWQFFNSTDTSMNRVNFIETINYEFGKNV
Ga0209191_100030424	F103232	GGA	MATAGVPVDLTGATISAQIIRRQISNLIDTRYGLSFDIADYTVSTPTAVDLTVTNRNNAAGLFTLVIDESAWSVISTDPQLDINAQDPVAFSGRIKISFPSSGTTPAQDSIIFLLFLVRSDGVVN
Ga0209191_100030428	F002689	GAG	MTTIDATDARLSTHEEVCALRYEIINARLKRMETIMITCAGAMIMSMAGAVFMLMNHTK
Ga0209191_100030429	F063624	N/A	MAQSAVGAIRAGCQMLSEGKQFIDDAKSEVEGIVGQVKETYETVTGLWGWITNLFSGEQNGKSEKQTVLSSTPETQAKPVEKKASRKPEPELSYEEFQARAVHDICENLKVYFEAIRQLKIHCLELDEEALTTEKVADSAIDRIEIQWQMKQLSAQLKQSMIYGTPESLGLGAMYAEFLAKQDEIVEEQEVARELKLKKDRDNAWQHDHRKQILMAKLGYVIVLTVSALWITALYSAL
Ga0209191_100030443	F095158	AGGA	MKQTYIVEFNTTNTQDGWSRIEFTSITKALGFISLMVKRGTHCQIFQG
Ga0209191_10003048	F002997	GAGG	MAIARFENITINNLTFGKSAFGEQSTTQTLWFATRARVQSVANSVKISDKYRVYSDIVNFTLNYTPNTKQMIDNQNLYSINWRGFDWRIDNVRESDDRMTVMILCVRNDPVVAV