Scaffold Ga0209400_1007641

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1007641
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7156
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10076412	F007747	AGGAG	MKDLGKITFGKSRPAPKQILVDVTYDGKTAKALHAFGLKQLKKDPDAVIEYVIVKALEGFAKK
Ga0209400_10076418	F005502	AGGAG	MRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPRVATVEVMK
Ga0209400_10076419	F016963	GAGG	MIEVLPEETTQDQLLNRVRSLARQLAEAKAALAASEARENDLMDRIRSGL