Scaffold Ga0209400

Basic Information
Taxon OID	3300027963 Open in IMG/M
Scaffold ID	Ga0209400_1003721 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027963 Open in IMG/M

Scaffold ID

Ga0209400_1003721 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11035
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (72.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11035

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (72.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006985	Metagenome / Metatranscriptome	360	Y
F011142	Metagenome / Metatranscriptome	294	Y
F035668	Metagenome / Metatranscriptome	171	Y
F043286	Metagenome	156	Y
F059759	Metagenome / Metatranscriptome	133	Y
F068428	Metagenome	124	Y
F077016	Metagenome	117	Y
F102815	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100372111	F077016	GGAG	VPTNSAEQVREFYRKQGEQRERERIIELLKQQQVIRNCGATGKLVFVNCNNLDVLYLKDDLLNELSNE
Ga0209400_100372113	F102815	AGG	MRSPEELFLEAIEAYKAWVACGKDFVNHANLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLELIK
Ga0209400_100372115	F059759	N/A	MTKQQIWDLLEIYREMQIANTMEQYNNAFEQLHDFIENNCLKAGA
Ga0209400_100372118	F011142	AGAAG	MAQVKVTGKVNKVFGANNQGLSLVESYKSATGEDYTRTYTVWYAVAHNIELEAEITVVGQLSAKIEDFEDKTGKPGRKVKLDINNAQTLEAPKPAATDLPF
Ga0209400_100372119	F043286	AGGA	VEDNQVECRRCGFKWAVNAEKRNRKDLLCISCRAKPAKVIQYGKLRCIPHNGDLNEKLQPIDDQGNLVFVGVRVCGHTDCVNPKHIVAG
Ga0209400_10037212	F006985	N/A	MIRETCSCGAEFETDDREAIELIKSWRRTHKHSNRAEKPVERDSSLLSNTEVSLGFQAIYDPLKEELE
Ga0209400_10037214	F068428	GAG	MLEDLQLPKRNTPCRIRTIKTELNDKDAVILEQAVMNPEWPYKTLSNELYKRGTKVSDAAIKHHREKRCSCWKD
Ga0209400_10037218	F035668	GGGGG	MSCNNCQDGCKCSRVNSINIFSKDYKAGQAHGQRDEHTRTSDALIELERSGVITNAQMQAILDLILEKLTDAMDIP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209400_1003721

Overview

Ecosystem & Geography

Associated Families

Sequences