Scaffold Ga0209400_1003054

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1003054
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12347
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009331	Metagenome / Metatranscriptome	319	Y
F013279	Metagenome / Metatranscriptome	272	Y
F014590	Metagenome	261	Y
F026830	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100305416	F014590	GGAGG	VRTRHLQSVTHEHSVTIKTKSDVLSPFGPVRAGLTTSQTTPEVQLTELLNSLESAVDNLNFKSFTVYDTLVTAMEGVRVALSNTATDEVGTDGHVRRVW
Ga0209400_100305417	F013279	AGGCGG	MQYDYRCPDCNSELTIERSIHEEPREPSCFDCHVTMIRKWDSPAITFKGKGFYSNGG
Ga0209400_100305423	F009331	GGA	MLNKKKKNTKKEKMICQNCHKGGEENTLTHYKRSAHWHDKCDDKGCVCQHKTGPGYVKRADTKVPLMQIQSP
Ga0209400_100305425	F026830	AGGAG	MPVPEGVITTSEILQPVQEEVVEVSTTEEAEETDDN