Scaffold Ga0209400_1000718

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000718
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28663
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (23.26%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F009808	Metagenome	312	N
F012574	Metagenome / Metatranscriptome	279	Y
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F057370	Metagenome / Metatranscriptome	136	N
F059970	Metagenome / Metatranscriptome	133	N
F099306	Metagenome / Metatranscriptome	103	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_10007181	F059970	N/A	MRAKSLKTKELQGTLIPSRIKSFSASPVGRSLIKLNEDEQKIYEKLKEHLQAHKASKDVDDIFLSIASRAIGHLLYNAEVLAVAGAVMVHPNGARQVSAEWTAFKQSMDMFLEISKSLGLDPGSRLKLDYFRDSNDTEDDEIAKLLKMN
Ga0209400_100071815	F057370	N/A	MKLRLIKEWNGKPIGATGVFLSDFGQKLVADGIAERLDDDFVVEQMPEKKVQEAPQPIYIPVPMPMEYFQDENELEKINDKIDLKKAKK
Ga0209400_100071817	F006590	N/A	MKTINIANTTIPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGEKCPYNLQSFCDLVDTDMGGIARIMEMISNEISPPQDDIEKNVVAKEENSHLNTSNAFVSEY
Ga0209400_100071820	F101173	AGTAG	MGVRYQTTVYNEKRRKIIVSIKDSNYSGAVGTFDTLSLGLQYDSESQQGQERFTPIIGSSFNLSLLINNNDLQTLLLDIGLAVEGRFTIYVTAYEDDNTTVSFNWYGYIVTDLVQFEDIPLSIGYVAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLDFVQSELVANSLPVLHTVFNWNENTTAYSAGKDYALLTVIQHRAFYHKDTKNNYNYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYARNPAAHRYFKYSALGVQTSGTFTFDFTMSNIQTNLPTSDLMRLSGGKWTYYPALKNVVVRYNHFAKQNLLAGVEYNYATNATPITTITPTLDSTNADARLSYTGILGFYAQALNPVNFQPYQFVFAVKVASIINSFPLQGFESANWTLGSGWLIDNKILSGVLITTEAFYTTFTVVNGRKYYVKIKVDIDNAGALRLRLGGVTKTITESGDYEYVIIATNTDTLKFDSISSPRFTGKIKSLEVKQENKYLRRRVNYTSGFNFQLEPATWESTFSEFEFNTETITADAAFVAYKTITFDTLNIPDTAEYIWEMRLKEMRNEAGTNIIANFAVSYLLSNNYLEFLPSGATTGQSDILEYGSDNDDKSSTVFSLDTYLGDGPSKTTDGGLKVLESGTYQNSSSWDVSSGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLTVDNPYLPHKVIEYSSGYYVFERGSFDLKTEIWQGDYFKIELDA
Ga0209400_100071821	F008815	N/A	MPNYTERTVLSKPRDFAEVANNAGSGGVVNNNVTETINNVTVTGSAVNIFNQEFLNTSSAVLTWTQNAGVLPKTNLSASVHVYQNGQKLIASQYVITAPATITIDSNTHYDGSNYIVFAININ
Ga0209400_100071827	F052594	AGG	MAAKNYGLDKNQVALCEAMVMKYPKGIKTNNVVSSASTLISFYNSKDENGKKYYEYMNPERMVSLLYQIIKNTNEKPETKELALRMLEIIYNKIIVN
Ga0209400_100071828	F099306	N/A	MMQEKVLRKRLHNLEKIYFAETMKENRNQDKWFLGIIEQRMRQEKTKLTLLKIGQHGC
Ga0209400_100071830	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAIVFIDFLNPSDKRSKYPSRVAAVATVIALLELWFSIQGKSTGAEFWAMYFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRKRNLPKPKESTLKMNATTSQPIKFTMAICFMFAVYVLPAQKNHFMAYNYMSIEKIGGDKLERTFYDTNEEQHYIDTITTDFLTSWNFWDGYSRSHLDNDIFMTYGTQTMKYIKSKELWYYRGKYYDYIDLLKFLVKYSKKNFVNKKIQW
Ga0209400_100071831	F054865	N/A	MEVKTNRFIIKYREGIVSVAANNVTEAIEKFKELRIETIAKEITIVPADEIYKRREKIFG
Ga0209400_100071836	F002778	N/A	MKEYNAQMMEIKSFCDEVNAWISTAPSAEMLDECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEDEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT
Ga0209400_10007184	F012574	N/A	MENLMRKNEYAQQVRQINSTSGYFHRFYELSGECRTHQEAWQKLEDEREALGLDEKYTTYNSFRKAKSNYMDMKFV