Scaffold Ga0209400_1000513

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000513
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33878
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (73.58%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007848	Metagenome	343	Y
F011648	Metagenome / Metatranscriptome	288	Y
F017467	Metagenome	240	Y
F048177	Metagenome	148	Y
F086791	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100051314	F048177	GAGG	VSNPTTDLKIVDNVFVKLHHFLNIGDTHEGHAHAFDHITLLAAGSVNMVHDNGQAEFKAPHLIVTPKGIKHQFTALEPNTVFCCIHAIREKDEIDGIANPNITIEQAWELLGIVPLTKD
Ga0209400_100051333	F017467	GGA	MNNNVDNYLAWWYIGVAKKRGWPEVVKLLAQYPEKEERIKQLIKKKLGK
Ga0209400_100051340	F011648	AGGAG	MSEQDQDFNNFQQHLERIFKDLEDGVFITADEIGDLRYACGLPSPIRNNHVNPVVRDVINDFSTIFGATK
Ga0209400_100051344	F086791	AGGAG	MSNYLFSMYCGDTYLDIYGSADPDEPSLGHVGGIDIEDVCTCDTKTSVWEMIQALNPDAFVKQAEEAYSERQR
Ga0209400_100051345	F007848	GAG	MKDFLGACLLGAVLGAIFAYGIPAKAQTLQMTDARGNNVGTVQIQGNTAQFVNPMGVTTQTATLYPNQVIIQTPNGVTTNVVGTTLYTVPLSPPVPPTVRVLQ