Scaffold Ga0209400_1000145

Overview

Basic Information

• Taxon OID: 3300027963
• Scaffold ID: Ga0209400_1000145
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62162
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (54.03%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007163	Metagenome / Metatranscriptome	356	Y
F009605	Metagenome / Metatranscriptome	315	Y
F011754	Metagenome / Metatranscriptome	287	Y
F012023	Metagenome / Metatranscriptome	284	Y
F012868	Metagenome / Metatranscriptome	276	Y
F014503	Metagenome / Metatranscriptome	262	Y
F019433	Metagenome	229	Y
F035192	Metagenome / Metatranscriptome	172	Y
F042301	Metagenome / Metatranscriptome	158	Y
F064668	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209400_100014512	F035192	AGGAG	MSKQEDTLHKAYGNMPKEVGYSGNWDFIPTWRGVKYYWYKLIRKVTR
Ga0209400_1000145121	F009605	AGGAG	MKKVLNAIWLFLVAFGEARYAASLARQGRVAEAKAVYGA
Ga0209400_100014533	F012023	AGG	MKQIDYTKLNERVVEQAYEAVLTKEQLQKLIQDKFDRATRYHQALAKAPTFSVN
Ga0209400_100014538	F042301	AGGAG	MVKEGSKWTGGDDKFHVIHVIELEGHTWVHYIKENVQDHELNREYSCYLESFLQRFRPIS
Ga0209400_100014539	F011754	N/A	MKIGFSLGRCVRDIVKGNVSINDVAFIIAATSIHDEPQLANVIEQYMYRDDDYLYGLDEAACQSVALDLWKTNKILQPRRQGLHRHRQPENAVWVDMFPTVISDNHSVKTAWDAYRLMIHMVENVDTDALETFK
Ga0209400_100014541	F014503	N/A	MKTIVNYWRFDDGTKPINPGNRFGEICVPRGWYCWVYPEDDTEFEEWMSRMCPTADVTHRFNSGDPMWTVYIHDDTEVTLFQLRWL
Ga0209400_100014545	F019433	N/A	MATAKTKIGTIHEILSTRARATFPYRVNFSEIKLAQVEEMAVWCITNCRGLWREEHYHALYFQFEDDYDAMMFMLKFGSSEGTKLK
Ga0209400_100014552	F064668	N/A	MKITVYSRNRLYETFSKWDVPRDFADPMANYLVYGYEPGSCFTSLLANDFFAAMQHSHPANTVEAFKCLVGWINDCMPPDAYSSYNRVSEWIHLDEDSRRAILEKYQLIFTEQEEVMLALRDESTIEPILY
Ga0209400_100014553	F007163	GGAG	MTIEDLEYIFEYQVEEGTTKLYFMLVDQGKMPIIERHPSNNLAGLLPMLSSFEYAGSDAGMPRFVK
Ga0209400_100014559	F012868	AGGAG	MRHYDYDWDLEPWGITFDPELNIDKLGWKSGDYFKITNVNGRAMLVKCDPLVKFIKEGENAIEQMG