Scaffold Ga0209536_100006146

Overview

Basic Information

• Taxon OID: 3300027917
• Scaffold ID: Ga0209536_100006146
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18459
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.640199
  • Long. (^o): -77.109447

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209536_10000614615	F023840	N/A	VKGEHDHIRVGLTLEDDFTLTRLKNTAHALEGEARDQYLWKTIFRFVCRERAYKSVMEEIGVAIDTNVDIFEDCEER
Ga0209536_10000614620	F015724	GGA	MARRKGSDDFGWKSHQPKKSKFGFSSFEGVSSAHQLGQPMPFKRKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTSGTVGLGAALPGACYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTKTSDTIYAVELSSNFGPPISFFTGEVLSDRFAADGTEKTTYNNYTVVGVGNGTTPITPGFAPIFNSIFISLDPDNSWSVIDNETLSTPASLPTPGDYFTTEMRFGCNCPDYLAREDFNLYEYNLKRRYPYTLPQDLKPGQYDVGDDYLSSRTAPSRDYPGFSRDFGFLYVKRLLNLPTYTDGNAVYSDPNLIYFAPRWCKHIYASFWDMQNRFGSDMFSKAWLAQPTDEPMDDMYREQFEINLAKQTTFEKRQEKLRWWEKYSPSQNTVPVHLMYPDMHPTMIKTLNFDTLASGISTAMTPSGFEMFKITEYNPFAPPDPEITPRLDAGTYSNGVLVSGSALIYDGGQYANGVLIPYPSLPSSINAGTY
Ga0209536_10000614621	F001215	GGAG	VASTSTNKQPCLVDRPFFRGAKVNNGTTVIADASNPDFGDLIQLVRVGDIPSEDGALVEDLFVVSAEGYPNDGGVRSAAFGVYVYAPNQAAPSTSAPLLIGKFEVGLSGDTEGLIQRVELPATVAPTPRTGDTNLVRPIEIGKSEALYLEKGYILCVGYLGNGPAAVSGGLSPSGVSILAQGGFY
Ga0209536_1000061467	F080002	N/A	VITTYTSSAYSGSSTSELKRPSLWDDNFKIDNLPTWIYTDNQPPKDIRDCEAKISSIEYTIKDIELQIEIRELELKTGSSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKNKRCALDNPSRLDKLIELLIEDPADFETKAKALLN
Ga0209536_1000061468	F085646	AGGAG	MDITPIVKDIRDALNSIEISLQLLVAQKDGKVTTAFVSKKTISQRLNIPSVTIDKLIHQGIVSGGDSGLVEGKHYCKVDPSERNSSKFLYDPHAILQAAWSNFTYV