Basic Information | |
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Taxon OID | 3300027911 Open in IMG/M |
Scaffold ID | Ga0209698_10000581 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 41904 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (72.92%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Pennsylvania, Clearfield County | |||||||
Coordinates | Lat. (o) | 41.170727 | Long. (o) | -78.4726 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005269 | Metagenome / Metatranscriptome | 406 | Y |
F010883 | Metagenome / Metatranscriptome | 298 | Y |
F071443 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209698_1000058145 | F010883 | AGGAG | MTRTTHEDARELIALGQSLSDAQQKWLRAHLDDCAACRSYADAAGRVVSALRSLPLAADARLVRATQMRVRFHATRVREARERMWLIGLACVSVGISTALSVPLLWRLFAWLGGMAGVSNPVWEAGFAIFFVTPALVVSLVLLARGTHLTSNGHHVRHGK |
Ga0209698_100005816 | F005269 | N/A | VNCRHGNVSLDLLRKIRNGYFLTRDDLTSSYVIIRHNVRTYLSAGVMAVIRGKQNAESELKKFEDSQDSVDRHEGWRYFIEKTDLKAGTDPAEATQHRQAELEGRESKALRETETPNSPSPHRQR |
Ga0209698_100005819 | F071443 | AGG | MFGVLFSVLVVVALLSILGEIVMRVRLTKRASRDKIALWRRGDEVAALYEEEFPDSRLPLFRRVVFWIFVTCAGVLVCSMVLWKSK |
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