Scaffold Ga0209583_10026582

Overview

Basic Information

• Taxon OID: 3300027910
• Scaffold ID: Ga0209583_10026582
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1887
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 41.5935
  • Long. (^o): -78.5142

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011803	Metagenome / Metatranscriptome	287	Y
F023966	Metagenome / Metatranscriptome	208	Y
F044745	Metagenome / Metatranscriptome	154	Y
F061313	Metagenome / Metatranscriptome	132	Y
F070583	Metagenome / Metatranscriptome	123	Y
F081702	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209583_100265822	F070583	AGGAG	MNDQDRVLIRQGARELDRKETEQVSGGLRTLTACTWDPDFGRDGDGPPEC
Ga0209583_100265823	F081702	AGGAG	MENQNRVLNRQGARELDAEEVEQVSGGVVHTNVITWGPTGRDGDGFLGEA
Ga0209583_100265824	F011803	AGGAG	MDNQNRVLIRRGARELTPTEADLINGGFVTLSLCTNSPSPDGDHRPGEVGC
Ga0209583_100265825	F061313	AGGA	MNDQNRVLLRRGARDLSGEEVEQVCGGLRTATKCTVTVGGASDGDTHSECGADIA
Ga0209583_100265826	F044745	AGGAG	MNDQDRVLARKGARDLNEHEVVQVSGGLRTLTACTFAAAGTPDGDTFHSECGADIA
Ga0209583_100265828	F023966	AGGAG	MDQNNRVLGRKGARELSEQEVESVTGALRVHHTLTPCFVDRKQQLLNGDQAIGECGV