Scaffold Ga0209382_10224688

Overview

Basic Information

• Taxon OID: 3300027909
• Scaffold ID: Ga0209382_10224688
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2141
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCN 62-11 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006276	Metagenome / Metatranscriptome	377	Y
F028545	Metagenome / Metatranscriptome	191	Y
F055844	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209382_102246881	F055844	GGAGG	VYFFSSAGRIVCKDVGLFEGFSCPWSPSPTFYKLAG
Ga0209382_102246882	F006276	AGGAG	MAAYDSGELVWETTGASAPRWVLLLDGPPGSARRRVAPQDPAPPQAASTSQLRECIRRAFHEDTGHWPVSVTLAAIRYKQRFRFYVVTYEPRV
Ga0209382_102246883	F028545	N/A	MKMTSTTTLAFPGLQCAIRQGEVKDLPDDPEAVAFIVARTSIREVPAPKSEPHHQDA