Scaffold Ga0209006_10054714

Overview

Basic Information

• Taxon OID: 3300027908
• Scaffold ID: Ga0209006_10054714
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3581
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium CG_4_9_14_3_um_filter_65_15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037313	Metagenome / Metatranscriptome	168	Y
F060168	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209006_100547145	F060168	GAGG	VTKKAFYKSKGFYGCVSTIVLIVGDIAANGVTVGNLFALMTAGFALYGRIVATAPLVLSDQSENDVEEARADVRKSKVTVDADRGQ
Ga0209006_100547148	F037313	GAGG	MSLKTRKLSGLFLCASVLMCAGCAQQGGGLLQPTPKQIISGKNTIVPSSAALSMEATNFCNAQAQVDYAGLVLYCEGKSPALPLSISTTYQTESTQFSCQVYGYTNSSNQLIVPQTVTLGNCPTGVAPAPVTAPSGAAATSVKS