Scaffold Ga0207428_10000522

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10000522
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45986
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010053	Metagenome / Metatranscriptome	309	Y
F021643	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_1000052226	F021643	AGGAG	MTLSSPDTPPTDVPEADWAEQALEADPLAEADAEGEPSLRPANVTSVLREADDADLAEQETVAYVGDDDLR
Ga0207428_1000052230	F010053	AGGA	MAMDMDVVYNQYGQRGADERREVRPPVDVETATWAAAGALDYWVLERGEWWGRVRGPDGRQVWVKAGDLRRTNGDSHPDAS