Scaffold Ga0207428_10000195

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10000195
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84698
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (51.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030494	Metagenome	185	Y
F035366	Metagenome	172	Y
F060113	Metagenome	133	Y
F096842	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_1000019532	F096842	GAG	MKGYFGVAVAAAVFAGSMQMNADEAISITVRPAVTSYGGNAQLKVLVSRNERNRMLVWEVDGPDYYRSSSMSLDGAASPRSYFFIVRELPAGEFDVRVSVKRNDNSVVMDRRSIRVVGGP
Ga0207428_1000019555	F060113	N/A	MIWFFERPGERLQCEIRQAASGAGYELVWTSNDGRVHVELSDDAAELIRRRRALEHWLRLDGWVRPGRVTPIHPPRTERTRKTDVPLH
Ga0207428_1000019556	F030494	GGCGG	MERVGPGGRDAARWRADLVGTPVFWLTIVVTLCALVPIAIFPRMRGWVGCAVLLMWTCFFTANAIRSRRLHSIISAPVYLLAAALLAGTASGFIAIDIWMVWVLGAGIIAANLSERFVGKYL
Ga0207428_1000019557	F035366	N/A	MTITNKNDANKAAVLERLSAVRSALQNEVESPASKRALDQCDRLEVAINQFHAEGLRFAAFTLLRMVFGPGTGFTHPVHIATQNLKDALDSAGYPH