Scaffold Ga0207428

Basic Information
Taxon OID	3300027907 Open in IMG/M
Scaffold ID	Ga0207428_10000008 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027907 Open in IMG/M

Scaffold ID

Ga0207428_10000008 Open in IMG/M

Source Dataset Name

Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	423201
Total Scaffold Genes	390 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	245 (62.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

423201

Total Scaffold Genes

390 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

245 (62.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Tennessee

Coordinates

Lat. (^o)

35.8444

Long. (^o)

-83.9599

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001519	Metagenome / Metatranscriptome	679	Y
F010196	Metagenome / Metatranscriptome	307	Y
F068101	Metagenome / Metatranscriptome	125	Y
F068102	Metagenome	125	Y
F069314	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_10000008115	F068101	GAGG	MAERDPDQYERSAAGLDFDDGNLRDKAEELGAKMLEGPEALLDEIENLLPEAWRDQIRTYPVVAMALGLGIGIWLGMKKSDEIIAAGSSLVSAAAMANVSAVMDKVKG
Ga0207428_10000008128	F068102	N/A	MAIRLLQYAPMVRTLSLLLSALLVFGCSKPQPLTEEKAKEIVASWMFKREPVYAEVPQRVWWNPKAPKDDYDEKAVRTLRNLERAGLVTVTEKLTADSGEYVAKVTKKGFPILGTAPSNRGPVYRATICQKVYDGLRDFVRHPHEPTVGHAELVWHYDNPTWLYPLFETKIDKPLKTPYLSNVSFWYAKHQWRFEINVKKTKAA
Ga0207428_10000008158	F001519	GGAG	MTLVNSLCAEISVFQGVGETTGVMVERRAIRGKKGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKADEPVVVHKHDWTVISSIPRTSRATKKRALAE
Ga0207428_1000000822	F010196	N/A	MGIAVPVTLFLLLHLHTVSELLTIAAVTFLAWGFGDLVSSIMERPRLKDRSPGRALREDWERRSKE
Ga0207428_10000008319	F069314	N/A	VSATGRRVEFLARAIVNRLEDRGLVEFLDAEAGILVVTKAIEENFAAIEALEREARQKLGERATEQQVDAEMARIALERNIIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207428_10000008

Overview

Ecosystem & Geography

Associated Families

Sequences