Scaffold Ga0207428

Basic Information
Taxon OID	3300027907 Open in IMG/M
Scaffold ID	Ga0207428_10000004 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027907 Open in IMG/M

Scaffold ID

Ga0207428_10000004 Open in IMG/M

Source Dataset Name

Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	727800
Total Scaffold Genes	654 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	443 (67.74%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

727800

Total Scaffold Genes

654 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

443 (67.74%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Tennessee

Coordinates

Lat. (^o)

35.8444

Long. (^o)

-83.9599

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005752	Metagenome / Metatranscriptome	391	Y
F014751	Metagenome	260	Y
F018026	Metagenome	237	Y
F031136	Metagenome / Metatranscriptome	183	N
F099554	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_10000004349	F099554	N/A	VLVVLFGMLMTINPRVRERFVEMTTGVQGRDVNSSLGPLGNAAFAAVSIGQDYAIGNPVLFSFLVVAVVLFMMMLRT
Ga0207428_10000004474	F031136	AGGAG	MRRLATIAIMLMAVTLPTGPGPGRAQSLSLSAPRLQASVEIDARDVFIYRYALENGAASTAAIWRMSIDISLPAGASRPSALGVAHGPGYFVAELSAPGRTLKTGEAIAVGLSAPQPGWRTTVGPDATARWIAVNEGARISPKQRRAGFSLASHGPPSLRRFTVAPYIDPQLAPVEPPQPDALEVERFEQDFDHYVESQSVTGLTLAPSALKAMTPDALLANLASQVAQARTLRWISNDAMTRNVTDKLQAARTAIARSQVDASGKILGALRTEVAALSGKEFTSEAVALIDVNVQYVLRLLAKR
Ga0207428_10000004476	F005752	N/A	MIWEHAGSWSGRGDVETNSFPASSAYLRFTWETSNETKPGEGRFKLILGSSISGRQIMVVVDSKGAGHDVAYVSEEARTFYIKVESANEDWKVTVDEGFPATIEPKH
Ga0207428_10000004501	F014751	GGAGG	MTTVLLATILSMGGAFVLATQQRDQQVAKSPFVGSWSADLSRSRLDPKLPLKGADITIGVTGNVITLASSVIMPSGETKQERETLRADGTETAATLTTGVVHVANWVGSHVLALIAKKGNQNIALITYEVSTDGQTLTARTSGLVEQVVIFKRREW
Ga0207428_10000004526	F018026	AGG	MTWMFAKGSKRLSCEAREAMLWYELVVTEPDGVTRVERYTERAGMLRRQHELLCAWKAQGWRELEEEPVTVQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207428_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences