Scaffold Ga0207428_10000002

Overview

Basic Information

• Taxon OID: 3300027907
• Scaffold ID: Ga0207428_10000002
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 854851
• Total Scaffold Genes: 778
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 459 (59.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041295	Metagenome	160	Y
F052452	Metagenome / Metatranscriptome	142	Y
F058288	Metagenome / Metatranscriptome	135	Y
F063832	Metagenome	129	Y
F066923	Metagenome / Metatranscriptome	126	Y
F072501	Metagenome	121	Y
F084432	Metagenome	112	Y
F101465	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207428_10000002257	F084432	N/A	MTEKRLTVILYGCDRAIWRGGPIDLRIADLFAAGGPRPLYEGRSEESTIDLRLQLPFDAGQVYGFTFSAPDHRPAWHLVRRADFIRPAERVELDDVILRLMLMPDAPGASDLPNAFERIRQIGSPFAAAAGGITAETFDALAEPAKMAFLNIEAKLRETSIDGSPLMSFVRGVSHVAVDRVFLRFDPSLKARMARATEFASAPGHAAPKRLPDLPDHPDSWKHVRYAEGNIQLSFSKDAAAMAGASTLAHSADVDIDLGRGLAHAKEWLENNVFRPGHKTNQALVYAQLYAQGILPRYTLDPAPSTTRRAAPTLTLKRVSSKTRGASTRRAVAPRPRRRSVRRPAKRKKSVS
Ga0207428_10000002390	F052452	GGA	MKKVLALLVVAACALPVFVGAQQADNAKMLQAFSAQARPDWGNLQVILLNDRTVEALFGASPAKAAFRTKARMTSVFFIQGTANKEFELKPEVTVTQKGETLPGKVTPMKNFTGGKVAKGDQLQGLVELPKKLDLYEPFKVTVGGQNVDFNLNDDDVRDYGNR
Ga0207428_10000002391	F041295	GAGG	MRRRQHAVRKAGRPPGGIDGQRVRDYPQVSIRVPPRLHAQLATLTRTTGLSRLEIFIRAIDCYEGTLRAQRRKQRRKAA
Ga0207428_10000002471	F066923	GAGG	MKTALFTRGLVVTALLVGTFGATAREAGSAGRAADKDVKLTGCLIRGEGDGAGYLLTNTPTEPWLNAAGQQVTPSALGTSGDYATMFYWLDEDGDLKQHIGHRVEVEGELKGDVKDGEITTERKDNWTDLTVKADGRTMKAHVPNTSIFPASNRDKSRKGDILVRRVDVKRVRMISAACN
Ga0207428_10000002474	F058288	GGAGG	MFLLNAAAAAIVMTAAATETPAVVVEAPDTPVKITHATVLTVAGDPPVLLYAATNQTDYDLEQFTVIVFMFDAKGILRTEQIAPGRRTLEAKSTKYSSMVIDGGTVDAAGAILVGVNNAQRANSESWWRVDLRPAAEAAVPKKKP
Ga0207428_10000002598	F101465	GAG	VSAAHFAASLLFGFLSILLPLLAFISMVAACVYVARWWIDRKS
Ga0207428_10000002635	F072501	GAG	MRVRITRQPLGFVQGLSLKHYRPGEVYELPPSLAEYLVMEQFAIFEMRDRDKTSVPVGQERRRRQ
Ga0207428_10000002712	F063832	N/A	MPLKQCAVSFTDVRGIRHTADVEAESLYEAAVQGIRRLNQDPWIERIGPGTRLEVEVREPSARHVVSVEQVERWLAGATANPTEATKKKKLKLLLVQR