Scaffold Ga0209404_10046160

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10046160
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2455
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046070	Metagenome / Metatranscriptome	152	N
F048244	Metagenome / Metatranscriptome	148	Y
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_1004616012	F048244	N/A	MKVELTQKEIDRIYFDLKNYVKTTYYVDRLNELSESDKEECKIELDLIEKFSKL
Ga0209404_100461606	F046070	GGA	MKRIKELRKVAQDAQTKMDLISKRIMQGGLSLDQQILHLDNFAKNQTRHMLGNEELYKLLKNK
Ga0209404_100461607	F090610	AGAAG	MHKVWRLYLIDNKSITEISKELNITKSKLQTQYGIK
Ga0209404_100461608	F101084	N/A	MNRDDLVYDFNDEMWNLYHEGTIDNEDDFYDQKNIWIDNQVIYTYECKKICDALDYDIFEEHDIFGKANNWSQAAYCAIYDLLNEHNDALNYDEMKLQEEEANA