Scaffold Ga0209404_10025105

Overview

Basic Information

• Taxon OID: 3300027906
• Scaffold ID: Ga0209404_10025105
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3292
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Tropical Atlantic Ocean
• Coordinates
  • Lat. (^o): 15.249
  • Long. (^o): -20.515
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054096	Metagenome / Metatranscriptome	140	Y
F059063	Metagenome	134	N
F062152	Metagenome / Metatranscriptome	131	Y
F103042	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209404_100251051	F054096	GGAG	MTIIEGDTIKLHPKTGKGKQVIHRDGSLFKVISFEDTVLFDEGKDWINLDSIDNPKNGRWIQRFHDKNFDWEIIR
Ga0209404_100251052	F062152	GGAG	MGAHYRNELVNHINKLNQKTIDSGGVGILTNDPSHWAGYGVYTVGDFQVYLEREHERNMYKSQLGE
Ga0209404_100251054	F103042	AGGA	MKELLYTKEKDYWLDVQLNTTECDKCGADLSPMKSYPIKVKNEGYPEPMGFIFVCAPCKTEQIFDLRKELL
Ga0209404_100251058	F059063	GGAG	MSVYKMNLKNLYGTFLQNGNSPEAFIANIIYERYGAKRKKMLQGLYNIVNGGPTHYWGKCNAEFIAWSMEEISVSPVSQNIPAKNVNIHNLEYYA