NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F103042

Metagenome / Metatranscriptome Family F103042

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F103042
Family Type Metagenome / Metatranscriptome
Number of Sequences 101
Average Sequence Length 69 residues
Representative Sequence MKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Number of Associated Samples 81
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 75.25 %
% of genes near scaffold ends (potentially truncated) 25.74 %
% of genes from short scaffolds (< 2000 bps) 91.09 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.079 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine
(17.822 % of family members)
Environment Ontology (ENVO) Unclassified
(86.139 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(71.287 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.25%    β-sheet: 18.18%    Coil/Unstructured: 56.57%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF08291Peptidase_M15_3 0.99
PF08804gp32 0.99
PF136402OG-FeII_Oxy_3 0.99
PF08443RimK 0.99
PF07661MORN_2 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG2849Antitoxin component YwqK of the YwqJK toxin-antitoxin moduleDefense mechanisms [V] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.08 %
All OrganismsrootAll Organisms7.92 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000137|LP_F_10_SI03_10DRAFT_c1023502Not Available996Open in IMG/M
3300000137|LP_F_10_SI03_10DRAFT_c1031993Not Available779Open in IMG/M
3300000137|LP_F_10_SI03_10DRAFT_c1048718Not Available572Open in IMG/M
3300000148|SI47jul10_100mDRAFT_c1015957Not Available1357Open in IMG/M
3300000222|LPjun09P12500mDRAFT_1028118Not Available1045Open in IMG/M
3300000238|SI36aug09_100mDRAFT_1013656Not Available1172Open in IMG/M
3300000247|LPaug09P26500mDRAFT_1047181Not Available514Open in IMG/M
3300000256|LP_F_10_SI03_120DRAFT_1022884Not Available1397Open in IMG/M
3300001683|GBIDBA_10004012Not Available11079Open in IMG/M
3300001683|GBIDBA_10085565Not Available1540Open in IMG/M
3300003478|JGI26238J51125_1038332Not Available1028Open in IMG/M
3300003500|JGI26242J51144_1004539All Organisms → Viruses → Predicted Viral3250Open in IMG/M
3300003501|JGI26243J51142_1024097Not Available1381Open in IMG/M
3300003586|JGI26261J51718_1072995Not Available665Open in IMG/M
3300003619|JGI26380J51729_10065183Not Available881Open in IMG/M
3300004277|Ga0066611_10158425Not Available785Open in IMG/M
3300004278|Ga0066609_10050393All Organisms → Viruses → Predicted Viral1430Open in IMG/M
3300004278|Ga0066609_10209358Not Available618Open in IMG/M
3300004280|Ga0066606_10174214Not Available786Open in IMG/M
3300005424|Ga0066826_10170023Not Available763Open in IMG/M
3300005430|Ga0066849_10388807Not Available526Open in IMG/M
3300006752|Ga0098048_1190605Not Available606Open in IMG/M
3300006789|Ga0098054_1314826Not Available558Open in IMG/M
3300006793|Ga0098055_1129784Not Available976Open in IMG/M
3300006793|Ga0098055_1385751Not Available519Open in IMG/M
3300006902|Ga0066372_10681384Not Available617Open in IMG/M
3300007291|Ga0066367_1157602Not Available859Open in IMG/M
3300007667|Ga0102910_1118714Not Available617Open in IMG/M
3300007760|Ga0105018_1149143Not Available703Open in IMG/M
3300007962|Ga0102907_1099650Not Available759Open in IMG/M
3300008624|Ga0115652_1000874Not Available27249Open in IMG/M
3300009077|Ga0115552_1024855Not Available2892Open in IMG/M
3300009077|Ga0115552_1237203Not Available739Open in IMG/M
3300009193|Ga0115551_1116969Not Available1240Open in IMG/M
3300009409|Ga0114993_10804113Not Available678Open in IMG/M
3300009593|Ga0115011_10035674Not Available3359Open in IMG/M
3300009593|Ga0115011_10106455All Organisms → Viruses → Predicted Viral1988Open in IMG/M
3300009786|Ga0114999_10187235Not Available1726Open in IMG/M
3300010153|Ga0098059_1172231Not Available848Open in IMG/M
3300010883|Ga0133547_10747444Not Available1929Open in IMG/M
3300014818|Ga0134300_1048038Not Available807Open in IMG/M
3300017720|Ga0181383_1056761Not Available1052Open in IMG/M
3300017753|Ga0181407_1021310Not Available1784Open in IMG/M
3300017753|Ga0181407_1133493Not Available617Open in IMG/M
3300017775|Ga0181432_1090710Not Available902Open in IMG/M
3300020383|Ga0211646_10149465Not Available841Open in IMG/M
3300020389|Ga0211680_10131714Not Available1009Open in IMG/M
3300020399|Ga0211623_10055189Not Available1352Open in IMG/M
3300020423|Ga0211525_10140283Not Available1050Open in IMG/M
3300020444|Ga0211578_10232960Not Available744Open in IMG/M
3300021442|Ga0206685_10065006Not Available1188Open in IMG/M
(restricted) 3300022931|Ga0233433_10002158Not Available17629Open in IMG/M
(restricted) 3300024255|Ga0233438_10255931Not Available690Open in IMG/M
(restricted) 3300024260|Ga0233441_1211616Not Available576Open in IMG/M
(restricted) 3300024261|Ga0233439_10256766Not Available769Open in IMG/M
(restricted) 3300024261|Ga0233439_10398505Not Available564Open in IMG/M
(restricted) 3300024264|Ga0233444_10228026Not Available842Open in IMG/M
(restricted) 3300024264|Ga0233444_10234694Not Available825Open in IMG/M
(restricted) 3300024299|Ga0233448_1109965Not Available739Open in IMG/M
3300025547|Ga0209556_1065651Not Available855Open in IMG/M
3300025656|Ga0209054_1125615Not Available699Open in IMG/M
3300025665|Ga0209360_1101254Not Available852Open in IMG/M
3300025665|Ga0209360_1117977Not Available764Open in IMG/M
3300025667|Ga0209043_1095951Not Available790Open in IMG/M
3300025672|Ga0209663_1069939Not Available1119Open in IMG/M
3300025676|Ga0209657_1168920Not Available602Open in IMG/M
3300025680|Ga0209306_1055456Not Available1262Open in IMG/M
3300025685|Ga0209095_1125632Not Available774Open in IMG/M
3300025688|Ga0209140_1054851Not Available1349Open in IMG/M
3300025690|Ga0209505_1035089Not Available1740Open in IMG/M
3300025709|Ga0209044_1102418Not Available880Open in IMG/M
3300025712|Ga0209305_1164245Not Available669Open in IMG/M
3300025722|Ga0209660_1129282Not Available858Open in IMG/M
3300025729|Ga0209558_1152990Not Available769Open in IMG/M
3300025890|Ga0209631_10349576Not Available699Open in IMG/M
3300025897|Ga0209425_10517770Not Available545Open in IMG/M
3300027048|Ga0208962_1029183Not Available807Open in IMG/M
3300027827|Ga0209035_10099731Not Available1435Open in IMG/M
3300027906|Ga0209404_10025105All Organisms → Viruses → Predicted Viral3292Open in IMG/M
3300027906|Ga0209404_10171400All Organisms → Viruses → Predicted Viral1331Open in IMG/M
3300028196|Ga0257114_1328777Not Available520Open in IMG/M
3300028535|Ga0257111_1176523Not Available643Open in IMG/M
3300031556|Ga0308142_1004478All Organisms → Viruses → Predicted Viral1809Open in IMG/M
3300031757|Ga0315328_10316774Not Available910Open in IMG/M
3300031766|Ga0315322_10110173Not Available1981Open in IMG/M
3300031766|Ga0315322_10168836All Organisms → Viruses → Predicted Viral1548Open in IMG/M
3300031766|Ga0315322_10198918Not Available1406Open in IMG/M
3300031766|Ga0315322_10888371Not Available542Open in IMG/M
3300031773|Ga0315332_10005231Not Available7519Open in IMG/M
3300031773|Ga0315332_10271177Not Available1097Open in IMG/M
3300031773|Ga0315332_10423476Not Available847Open in IMG/M
3300031774|Ga0315331_10295797Not Available1194Open in IMG/M
3300031774|Ga0315331_10326351Not Available1129Open in IMG/M
3300031774|Ga0315331_10944307Not Available591Open in IMG/M
3300031775|Ga0315326_10192213All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300031775|Ga0315326_10198166Not Available1320Open in IMG/M
3300031801|Ga0310121_10122535Not Available1643Open in IMG/M
3300032011|Ga0315316_10963511Not Available696Open in IMG/M
3300032032|Ga0315327_10054705Not Available2387Open in IMG/M
3300032278|Ga0310345_10564320Not Available1093Open in IMG/M
3300034695|Ga0372840_066373Not Available1066Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine17.82%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine17.82%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater15.84%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine9.90%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater7.92%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.93%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine3.96%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.96%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.98%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.98%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.98%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.98%
Hydrothermal Vent PlumeEnvironmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume1.98%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.99%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.99%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000137Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10EnvironmentalOpen in IMG/M
3300000148Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100mEnvironmentalOpen in IMG/M
3300000222Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 500mEnvironmentalOpen in IMG/M
3300000238Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100mEnvironmentalOpen in IMG/M
3300000247Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P26 500mEnvironmentalOpen in IMG/M
3300000256Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - ample_F_10_SI03_120EnvironmentalOpen in IMG/M
3300001683Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assemblyEnvironmentalOpen in IMG/M
3300003478Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNAEnvironmentalOpen in IMG/M
3300003500Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNAEnvironmentalOpen in IMG/M
3300003501Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNAEnvironmentalOpen in IMG/M
3300003586Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNAEnvironmentalOpen in IMG/M
3300003619Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNAEnvironmentalOpen in IMG/M
3300004277Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200mEnvironmentalOpen in IMG/M
3300004278Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_150mEnvironmentalOpen in IMG/M
3300004280Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100mEnvironmentalOpen in IMG/M
3300005424Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306SV49EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300007291Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_AEnvironmentalOpen in IMG/M
3300007667Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3EnvironmentalOpen in IMG/M
3300007760Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300007962Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02EnvironmentalOpen in IMG/M
3300008624Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7umEnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300014818Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0152 : 8 days incubationEnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017775Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17EnvironmentalOpen in IMG/M
3300020383Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)EnvironmentalOpen in IMG/M
3300020389Marine microbial communities from Tara Oceans - TARA_B100000809 (ERX556139-ERR599008)EnvironmentalOpen in IMG/M
3300020399Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)EnvironmentalOpen in IMG/M
3300020423Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)EnvironmentalOpen in IMG/M
3300020444Marine microbial communities from Tara Oceans - TARA_B100001245 (ERX556114-ERR598980)EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024260 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_135_MGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024299 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MGEnvironmentalOpen in IMG/M
3300025547Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025656Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m (SPAdes)EnvironmentalOpen in IMG/M
3300025665Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025667Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025672Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025680Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)EnvironmentalOpen in IMG/M
3300025685Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 (SPAdes)EnvironmentalOpen in IMG/M
3300025688Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_120m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025709Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025712Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)EnvironmentalOpen in IMG/M
3300025722Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025729Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_150m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300027048Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C43A7_80 (SPAdes)EnvironmentalOpen in IMG/M
3300027827Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300031556Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB9_538_SCM (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031766Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 21515EnvironmentalOpen in IMG/M
3300031773Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 34915EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032032Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 32315EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M
3300034695Seawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500mEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
LP_F_10_SI03_10DRAFT_102350223300000137MarineMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIEVKYDEFIFVCASCKNKQIFKLRKELL*
LP_F_10_SI03_10DRAFT_103199313300000137MarineMELLYTKEKDYLMDAQLETTECEKCGVDIDPMKSYIMKVKNSGYPNANGFIFVCASCK
LP_F_10_SI03_10DRAFT_104871813300000137MarineKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL*
SI47jul10_100mDRAFT_101595743300000148MarineMNKELLYDNEKEYWLDIQLNTTECDKCGTDMDVMKSIPVKFENKGYPISNGYIFVCSTCKKGVI*
LPjun09P12500mDRAFT_102811833300000222MarineMNKELLYDNEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKFENKGYPISNGYIFVCSSCFKKGVK*
SI36aug09_100mDRAFT_101365613300000238MarineMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNK
LPaug09P26500mDRAFT_104718123300000247MarineMNKELLYDNEKEYWLDVQLNTTECDKCGTDMNVMKSIPVKFENKGYPISNGYIFVCSSCFKKGVK*
LP_F_10_SI03_120DRAFT_102288443300000256MarineMEKLYDNDRELWFDIQLETTECDKCGVDINPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKDLL*
GBIDBA_1000401233300001683Hydrothermal Vent PlumeMENLYDTEKEYWLDVQLNTTECDKCGIDMDVMNSYPIKFENKGYPISNGYIFVCASCKNKQIFKLRKELL*
GBIDBA_1008556573300001683Hydrothermal Vent PlumeMNKELLYDNEKEYWLDIQLNTTECDKCGIDMDVMKSIPVKFENKGYPISNGYIFVCSTCKKGVI*
JGI26238J51125_103833233300003478MarineMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL*
JGI26242J51144_100453923300003500MarineMEKLYDNDRELWFDIQLETTECDKCGVDIXPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKDLL*
JGI26243J51142_102409733300003501MarineMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKDLL*
JGI26261J51718_107299513300003586MarineMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKELL*
JGI26380J51729_1006518343300003619MarineLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL*
Ga0066611_1015842513300004277MarineMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYIFVCGSCKNKQIFKLRKDLL
Ga0066609_1005039343300004278MarineMEKLYTKSKDYWMDVQLNTTECDKCGVDVDSMNSYPIKVENNEFIFVCGSCKNKQIFKLRKDLL*
Ga0066609_1020935813300004278MarineMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKDL
Ga0066606_1017421433300004280MarineMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRK
Ga0066826_1017002323300005424MarineMNKDYWFVRDEKEYWMDVQLRTTECDECGTDMDVKKSIPVRTKNKGYPIEDGYFFVCSSCFKNFKKD*
Ga0066849_1038880723300005430MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDFDPMNSYPVKVENNGFIFVCAPCKTKQIFTLRKELL*
Ga0098048_119060533300006752MarineMKELLYTKEKDYWLDVQLETTECDKCGVDVDPMNSYPIKVKNEGYPNPMGFIFVCASCKNKQIFTLRKELL*
Ga0098054_131482623300006789MarineMFRCYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDFDPMNSYPVKVENNEFIFVCAPCKTKQIFTLR*
Ga0098055_112978423300006793MarineMKELLYDTEREYWMDVQLNTTECDKCGADLSPMKSYPIKVENKGYPISNGFIFVCASCKNKQIFTLRKELL*
Ga0098055_138575133300006793MarineYWMDVQLNTTECDKCGADLSPMNSYPIKVKNEGYPISNGFIFVCAPCKTKQIFDLRKELL
Ga0066372_1068138433300006902MarineMNKELLYDNEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKIKNKGYPIENGYIFVCSSCKKGLK*
Ga0066367_115760213300007291MarineMNKELLYDNENEYWLDVQLNTTECDKCGTDMDVMKSIPVKFENKGYPISNGYIFVCSSCKKGLR*
Ga0102910_111871423300007667EstuarineMEKLYTKSKDYWMDVQLNKTKCDKCGVDVDPMNTYPIEVKYDEFIFVCGPCHPVVINKYVQ*
Ga0105018_114914323300007760MarineMKELLYTKEKDYWLDVQLSTTECDKCGVDLDPMKSIPVKVANDGYPEPMGFIFVCFQCKEAGRC*
Ga0102907_109965033300007962EstuarineVFIKDYIMELLYTKEKDYLMDAQLETTECEKCGVDIDPMHSYIMKVKNSGYPNANGFIFVCASCKNKSIMKLRKELL*
Ga0115652_1000874483300008624MarineVFIKDYIMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMNTYPIKVKNEGYPNPMGFIFVCASCKNKQIFKLRKDLL*
Ga0115552_102485523300009077Pelagic MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDLDPMKSYPVKVENRDSQTFMFVCASCKNKQIFKLRKD*
Ga0115552_123720323300009077Pelagic MarineMEKLYTKEKDYWLDVQLETTECDKCGVDVDPMNSYPIKVENNEFIFVCASCKNKQIFKLRKDLL*
Ga0115551_111696943300009193Pelagic MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDLDPMKSYPVKVENRDSQTFMFVCASCKNKQIFKLRKDLL*
Ga0114993_1080411323300009409MarineMELLYTKEKDYWMDIQMETTECDKCGVDIDPMNSYPVEQENKGYPISKGYIFVCASCKNKQIYDLRKELL*
Ga0115011_10035674143300009593MarineMKELLYTKEKDYWMDVQLNTTECDKCGADLSPMKSYPIKVKNEGYPEPMGFIFVCAPCKTEQIFTLRKELL*
Ga0115011_1010645533300009593MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMNTYPIKVKNDGYPNPIGFIFVCASCKNKQIYKLRKDLL*
Ga0114999_1018723523300009786MarineMELLYTKEKDYLMDAQLETTECEKCGVDIDPMKSYIMKVKNSGYPNANGFIFVCASCKTKSIMKLRKELL*
Ga0098059_117223133300010153MarineMEKLYTKSKDYWMDVQLNTTECDKCGADLSPMNSYPIKVKNEGYPNPMGFIFVCAPCKTKQIYTLRKELL*
Ga0133547_1074744413300010883MarineVKIGCFKIIKKDYIMELLYTKEKDYWMDIQMETTECDKCGVDIDPMNSYPVEQENKGYPISKGYIFVCASCKNKQIYDLRKELL*
Ga0134300_104803813300014818MarineVFIRIKIMKELLYTKEKDYWLDVQLETTECDKCGVDVDPMNTYPVKVKNEGYPNPIGFIFVCASCKNKQIYDLRKELI*
Ga0181383_105676123300017720SeawaterMKELLYTKSKDYWLDVQLETTECDKCGVDVDPMKSYPIKVENNEFIFVCGPCHPVRINKYVQ
Ga0181407_102131083300017753SeawaterMKELLYTKSKDYWMDVQLNTTECDKCGVDVDPMSTYPIKVENNEFIFVCGPCHPVRINKYVQ
Ga0181407_113349323300017753SeawaterMKELLYTKSKDYWMDVQLNKTKCDKCGVDVDPMNTYPIEVKYDEFIFVCGPCHPVVINKYVQ
Ga0181432_109071033300017775SeawaterMNKDYWFVRDEKEYWMDVQLRTTECDECGTDMDVMKSIPVRTKNKGYPIEDGYFFVCSSCFKNFKRDSFAN
Ga0211646_1014946513300020383MarineMNKDYWFVRDEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKIKNKGYPIENGYIFVCSSCKKGLK
Ga0211680_1013171433300020389MarineMNKELLYDNEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKFENKGYPISNGYIFVCSSCFKNFKKE
Ga0211623_1005518943300020399MarineMNKELRYDNEKEYWLDVQLNTTECDKCGIDMDVMKSIPVKFENKGYPISNGYIFVCSSCKKGLK
Ga0211525_1014028323300020423MarineMENLYEKEKDYWLDVQLNTTECDKCGIDIDVMNSYPIRFESEVFNNFNGYIFVCASCKNKQIFNLRKELL
Ga0211578_1023296023300020444MarineVFFNDVFVGAVNMELMYDNERDYWLDVQLNTTECEKCGCELTVANSYPIKVKHKGYPNPNGYIFVCASCKNKSIYDLRKDLL
Ga0206685_1006500623300021442SeawaterMNKEYWFVRDEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKFENKGYPISNGYIFVCSSCFKKGVK
(restricted) Ga0233433_10002158173300022931SeawaterMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKDLL
(restricted) Ga0233438_1025593113300024255SeawaterMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
(restricted) Ga0233441_121161623300024260SeawaterMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYLFVCASCKNKQIFKLRKELL
(restricted) Ga0233439_1025676623300024261SeawaterMELLYTKEKDYLMDAQLETTECEKCGVDIDPMHSYIMKVKNSGYPNANGFIFVCASCKNKSIMKLRKELL
(restricted) Ga0233439_1039850523300024261SeawaterMKELLYTKSKDYWMDVQLNTTECDKCGVDVDSMNSYPIKVENNEFIFVCGSCKNKQIFKLRKDLL
(restricted) Ga0233444_1022802613300024264SeawaterMKELLYTKSKDYWMDVQLNTTECDKCGVDVDSMNSYPIKVENNEFIFVCGSCKNKQIFK
(restricted) Ga0233444_1023469443300024264SeawaterEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
(restricted) Ga0233448_110996513300024299SeawaterRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYIFVCGSCKNKQIFKLRKDLL
Ga0209556_106565133300025547MarineMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Ga0209054_112561513300025656MarineMEKLYDNDRELWFDIQLETTECDKCGVDIDPMSSYPIKVENKGYPISKGYIFVCGSCKNKQIFK
Ga0209360_110125413300025665MarineKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Ga0209360_111797713300025665MarineMKELLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFV
Ga0209043_109595113300025667MarineMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSTYPIEVKYDEFIFVCASCKNKQIFKLRK
Ga0209663_106993923300025672MarineMKELLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Ga0209657_116892013300025676MarineFRKFSIIWIVRNSSYIRNVFIKDYIMELLYTKEKDYLMDAQLETTECEKCGVDIDPMKSYIMKVKNSGYPNANGFIFVCASCKTKSIMKLRKELL
Ga0209306_105545643300025680Pelagic MarineMEKLYTKEKDYWLDVQLETTECDKCGVDVDPMNSYPIKVENNEFIFVCASCKNKQIFKLRKDLL
Ga0209095_112563233300025685Pelagic MarineMEKLYTKEKDYWLDVQLETTECDKCGVDVDPMNSYPIKVENNEFIFVCASCKNKQ
Ga0209140_105485133300025688MarineMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSTYPIEVKYDEFIFVCASCKNKQIFKLRKDLL
Ga0209505_103508983300025690Pelagic MarineMEKLYTKEKDYWLDVQLNTTECDKCGVDLDPMKSYPVKVENRDSQTFMFVCASCKNKQIFKLRKDLL
Ga0209044_110241833300025709MarineMFRRYSCFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Ga0209305_116424523300025712Pelagic MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDLDPMKSYPVKVENRDSQTFMFVCASCKNKQIFKLRKDLL
Ga0209660_112928223300025722MarineMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDIQLNTTECDKCGVDVDPMSTYPIEVKYDEFIFVCASCKNKQIFKLRKELL
Ga0209558_115299023300025729MarineMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENNEFIFVCGSCKNKQIFKLRKDLL
Ga0209631_1034957633300025890Pelagic MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDLDPMKSYPVKVENRDAQTFMFVCASCKNKQIFKLRKDLL
Ga0209425_1051777013300025897Pelagic MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDLDPMKSYPVKVENRDSQTFMFVCASCKN
Ga0208962_102918333300027048MarineMFRRYSYFSNVFIGIIIMEKLYTKSKDYWLDVQLETTECDKCGVDVDPMKSYPIKVENNEFIFVCASCKNKQIFTLRKELL
Ga0209035_1009973113300027827MarineMELLYTKEKDYLMDAQLETTECEKCGVDIDPMHSYIMKVKNSGYPNANGFIFVCASCKNKQIYDLRKELL
Ga0209404_1002510543300027906MarineMKELLYTKEKDYWLDVQLNTTECDKCGADLSPMKSYPIKVKNEGYPEPMGFIFVCAPCKTEQIFDLRKELL
Ga0209404_1017140043300027906MarineMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMNTYPIKVKNDGYPNPIGFIFVCASCKNKQIYKLRKDLL
Ga0257114_132877713300028196MarineMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKELL
Ga0257111_117652323300028535MarineMNKELLYDNEKEYWLDVQLNTTECDKCGTDMNVMKSIPVEFENKGYPISNGYIFVCSSCFKKGVK
Ga0308142_100447853300031556MarineMELLYTKEKDYWMDIQMETTECDKCGVDIDPMNSYPVEQENKGYPISKGYIFVCASCKNKQIYDLRKELL
Ga0315328_1031677433300031757SeawaterMNKELLYDNEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKFENKGYPISNGYIFVCSSCKKGLK
Ga0315322_1011017393300031766SeawaterMKELLYTKSKDYWMDVQLNKTKCDKCGVDVDPMKSYPIKVENNEFIFVCGPCHPVRINKYVQ
Ga0315322_1016883623300031766SeawaterMFRRYSYFSNVFIKDYIMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMNTYPIKVENKGYPNPMGFIFVCGSCKNKQIFKLRKDLL
Ga0315322_1019891823300031766SeawaterMKELLYTKSKDYWMDVQLNTTECDKCGVDVDPMSTYPIEVENSEFIFVCGSCHPVRINKYVQ
Ga0315322_1088837123300031766SeawaterMKELLYTKSKDYWMDVQLNKTKCDKCGVDVDPMSTYPIKVENNEFIFVCGPCHPVRINKYVQ
Ga0315332_10005231153300031773SeawaterMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMNTYPIKVENKGYPNPMGFIFVCGSCKNKQIFKLRKDLL
Ga0315332_1027117753300031773SeawaterTVYMFRRYSYFSNVFIGIIIMEKIYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Ga0315332_1042347633300031773SeawaterMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNKTKCDKCGVDVDPMSTYPIKVENNEFIFVCGPCHPVRINKYVQ
Ga0315331_1029579763300031774SeawaterITVYMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNKTKCDKCGVDVDPMNTYPIEVKYDEFIFVCGPCHPVVINKYIQ
Ga0315331_1032635153300031774SeawaterVYMFRRYSYFSNVFIGIIIMEKLYTKSKDYWMDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCHPVRINKYVQ
Ga0315331_1094430723300031774SeawaterMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPIGFIFVCGSCHPVRINKYVQ
Ga0315326_1019221353300031775SeawaterMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMSSYPIKVENKGYPNPNGFIFVCGSCKNKQIFKLRKDLL
Ga0315326_1019816643300031775SeawaterMKELLYTKSKDYWLDVQLETTECDKCGVDVDPMKSYPIKVENNEFIFVCASCKNKQIYDLRKELL
Ga0310121_1012253543300031801MarineMNKELLYDNEKEYWLDVQLNTTECDKCGIDMDVMKSIPVKFENKGYPISNGYIFVCSSCFKNFKKE
Ga0315316_1096351113300032011SeawaterMKELLYTKEKDYWLDVQLNTTECDKCGADLSPMNSYPIKVKNEGYPNPMGFIFVCAPCKTKQIFTLRKELL
Ga0315327_1005470513300032032SeawaterKDYIMKELLYTKEKDYWLDVQLNTTECDKCGVDVDPMSSYPIKVENNEFIFVCGSCKNKQIFKLRKDLL
Ga0310345_1056432033300032278SeawaterMNKDYWFVRDEKEYWMDVQLRTTECDECGTDMDVMKSIPVRTKNKGYPIEDGYFFVCSSCFKNFKKD
Ga0372840_066373_100_2973300034695SeawaterMNKELLYDNEKEYWLDVQLNTTECDKCGTDMDVMKSIPVKFENKGYPIEDGYIFVCSSCFKKGVK


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