Scaffold Ga0209488_10048274

Overview

Basic Information

• Taxon OID: 3300027903
• Scaffold ID: Ga0209488_10048274
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3129
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014204	Metagenome	265	Y
F051311	Metagenome / Metatranscriptome	144	Y
F063022	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209488_100482743	F014204	GGA	MAVKIWLAVKNALGRLSDGHYRASVVFTFTISNGLVNTHGDVLLTDGGMEIIEQRGKDPKTAARIALERLLKQGRDPFETQILLNVPYGHAEYFSKNGDYEALPTLT
Ga0209488_100482745	F063022	GGA	MPASLVINLSGIQKMLPCLIVDKSQEGFRLRGSFKLRRGQLVELVVDDPMMDPVRCEVIWIGKVGSEQAEEVGLQATAR
Ga0209488_100482747	F051311	AGGA	MNDRISWAMALHDFFGARGTDVAAVNPNDLRNVWTMMRDLQAHAQAGQSGSISSGLYERACSPGANVLAVWYRASILGVLQTLPGNPLTPWSHEGELDDEVFQIAATFPMKKLPVGLVKNGLPFDVQELVKQIGARA