Scaffold Ga0209048_10361743

Overview

Basic Information

• Taxon OID: 3300027902
• Scaffold ID: Ga0209048_10361743
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1003
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021045	Metagenome / Metatranscriptome	220	Y
F057885	Metagenome / Metatranscriptome	135	Y
F072993	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209048_103617432	F072993	AGGA	MSSTTITRGNILEAFVIAPSLTPAVLTTASTQSLQSFAIPGLKASDIVYFMQYAGNQTKDIAITNCDVTADNSLTVQFQNTSGGATAITPASGIYYFKVIRPDGLPVAVNAA
Ga0209048_103617433	F021045	N/A	MAASTVQRNAGSTVALSVTSTAHSAVLIDDSTNDQINYSAFLNTGAAPIAVKWGTTDPGAPTFPVDGTNGDFVLPAGMTTPLILATPTTPYYLTAKSNSGTAGILYVTPAADQS
Ga0209048_103617434	F057885	AGGAG	MADPAKVLDQNLLPVQAYFAVDGTFQTFIGQGQPFYATVNPYQSG