Scaffold Ga0209668_10000169

Overview

Basic Information

• Taxon OID: 3300027899
• Scaffold ID: Ga0209668_10000169
• Source Dataset Name: Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27277
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (22.41%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Associated Families: 16

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location

• Location Name: University of Notre Dame, Indiana, USA
• Coordinates
  • Lat. (^o): 41.7
  • Long. (^o): -86.23

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F002738	Metagenome / Metatranscriptome	533	Y
F007026	Metagenome	359	Y
F013517	Metagenome / Metatranscriptome	270	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F020341	Metagenome	224	Y
F021097	Metagenome	220	Y
F025487	Metagenome	201	Y
F025982	Metagenome / Metatranscriptome	199	Y
F029735	Metagenome	187	Y
F056536	Metagenome	137	N
F059883	Metagenome	133	N
F067537	Metagenome / Metatranscriptome	125	N
F097198	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209668_100001691	F025982	N/A	MSCHDHAIKDFDLQLEMNGLQLDMLKENGEVIPYHLDEHSDLEEKKLKLLVGKRFHQNSSNAYWYYLQREKSTK
Ga0209668_1000016917	F020341	N/A	MKGFSSTKQRTRSSSYWVASYTKDNDDEPLGIHKKVLSYKPGQDKEVLMTNYCNSIMKINRNIWEILVHQGPSEVPDSGDQIVIRLSREPFKGCSQLQ
Ga0209668_100001692	F001018	N/A	MTQITQAKLKDLTVIKLYEHYNALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYSMASHEDALERIKKEGDLITQSKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEVSSDPEFWHTTERELYCVEETITTTKRVVLRSMSGEVLDERTEPKTTTKVLPNLDAIRSAYQEGRQLPHGVKVVQEYSVRSKRIFGEPRVEMVSSEYPGELLPEDSSAD
Ga0209668_1000016923	F067537	N/A	MTTKRQFNYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGATQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE
Ga0209668_1000016925	F025487	GGGGG	MTHDSIDLDLVDKTIALIPDHAWTQVRQAIVTALVDNMPGSVIQHLTGSYDDFDRAEEILYDYYELPALSHELIADAFKIMGEVNCLELLHSLNLTEDELQTMQQQ
Ga0209668_100001693	F013517	N/A	MFESLFAAVLPVMKDLLWAAAGIALTYLFNQFQTQFN
Ga0209668_1000016934	F007026	N/A	MAYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDNDVVQEAISLLEEIIDYDPTPNEPGEPPMTMDEMHSAAWKEHQEMHR
Ga0209668_1000016935	F019817	N/A	MQVQNQIPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKSS
Ga0209668_100001694	F002738	N/A	MHSEKLVIAMSIDTYGLSSEQYTEFFHKNIRAAAKLYLDTCNILSSEGVGNVDFKTVSEMYQEAVYTTNDDCRRYQKSNNPEALKENDMYGMVPSHQEIIDMVETLVTYTEALDAKLQALTDYVSNLVTITTVGLEGIATTLDDTVD
Ga0209668_1000016940	F059883	N/A	MTEDNKRYHLIITVDEKYAIVNALAFYHAHHIQGALMDEDEREQYMLAFQEDGPTFVDQLATKIANTF
Ga0209668_1000016946	F021097	AGG	MQRNYQRNYFSDACVAILCGTGLGLLLSVGAQKVLNRHYKATCHNQPGHNLIYTKSFLGDTYYCINSKYMN
Ga0209668_1000016947	F015587	N/A	MTALNIRKNLASILVNTAAAVENAKLPTKAGMTEKLNEYRTRAAALIMPNDMAFIIQPKQGN
Ga0209668_1000016948	F056536	N/A	MVQEGFDSSPRHCHNPVAFTQFNTMLCYYPYEGATERITWHGGESTMLHYQVQVDDYKGDPDWIERYSQTLGGGIPCGTKELLAAMSDYYQHISQLHLDTMAGTIF
Ga0209668_1000016956	F029735	N/A	MAKDHRLALDRYIDFTKDPFLVKRKVDFDDSFSSKPSTGKAPWMPSRFTEDDLLRRVQTRKLQLNPSLNFVGNSPEEYEVFANIGRFTRKEGYNFEEGRPNTVLRPEDQPGFSPIWVEAYRISPTVKPEKRASNPMPRVNNPDPKGYMMAAAEQRALKEAEGDKSVAQLMSSTPEDKAEMSKRNNEDVKKA
Ga0209668_100001697	F002333	N/A	MSTQTQLELNAAQAAIYTRSNIRRAFQDFDDTEVSGIYLRGDDCLVVHRDGSEQTYNRELIKVAHTNYTHRLKDFFSYLGPNYRGPSVWHNNAYVLFKGWNYSHALGHLTSNAKLQAHWADKFIHVSDTNKVLHLLQSDQTDIGHLVAPDGLRLPNRPIDIDGDMEADDSEPVMGEPWCSCGSYQRQLSNVSDFASEIQGFKPWCIHLSWFNKYRELLCKRTEARNASPSGTPEKCVAWWYAPPADHISDGRFVLLYTNSGAQAPLSHWRTYKPKDIFTQHDAWDLFFNMMEAGYVPFPGTALPQLKSAIKKQ
Ga0209668_100001699	F097198	N/A	MLQFEMGPEEAFWQEKMIRSIKECNSMSELKEMATLLTKIATMRQVAIKGLVKDAMDLMSNQVDRDILTRLKGSDPLQ