NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209067_10009744

Scaffold Ga0209067_10009744


Overview

Basic Information
Taxon OID3300027898 Open in IMG/M
Scaffold IDGa0209067_10009744 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5105
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NamePennsylvania, USA
CoordinatesLat. (o)41.1289Long. (o)-78.4195Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y
F010188Metagenome / Metatranscriptome307Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209067_100097445F006480AGGMRRILIGGIVLLLCGAIAARSKSDPLMFVFLRVDHREDFGILRPMIVPNIAVQLDSGPRELKPGTVLRCWSSMREHDAIVETHISKITELVLDCGERKFVVKALEFSPPAK
Ga0209067_100097446F000512N/AMIRVLRETYDTPEAVAHRLKQAGGINRFGEANYRAVWGWNRLAWIGGKFEDRDEHGALLRERVELRQEPKYPAVNRWHIERWLPPETYGSPRAWYAQTIERENGISIPALGPYPSSGEYEHCFTLETPRGEFLQLTPTVAEYVARAIECSRSSPRAKSRSRLYGREQRTECTYDQWAYDVMDDAVPAFHQQPFVTVA
Ga0209067_100097447F000739GGTGGMNRFELWLKGILAAAISGGAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINAVIGVAAYLQKSPLPTE
Ga0209067_100097448F070523AGGMLLFPDERVAIHAKLGSVLKGGDPAEILLVIILLLALRPPSRRKAPKKKGQPKRLP
Ga0209067_100097449F010188AGGAMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDTLLVVAAVA
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