Scaffold Ga0209068_10000036

Overview

Basic Information

• Taxon OID: 3300027894
• Scaffold ID: Ga0209068_10000036
• Source Dataset Name: Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 87945
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (67.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location

• Location Name: Pennsylvania, USA
• Coordinates
  • Lat. (^o): 41.1289
  • Long. (^o): -78.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001535	Metagenome / Metatranscriptome	675	Y
F017549	Metagenome	240	Y
F041889	Metagenome / Metatranscriptome	159	Y
F048535	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209068_1000003612	F041889	GAGG	VRAALQPEASPERFVSANEAARFLSVTRRYVLELARRGIQGAYPIGTGSQRKIWVFRLSELATAVMQKESSAPIHKFRKVCDPALGSPR
Ga0209068_100000362	F048535	AGGAG	MTQEAIKALTDVELSQVVVWTQAEVKARTEHRKQEAIARIKELAGAVGVSVAIGGVRGRPARVRAKPSLKG
Ga0209068_1000003644	F017549	GAG	MRFLKMLSKPAAMASGWTSAVLCFSAASGYWLAGQRGRALCWAVLGAVEVAAIVL
Ga0209068_1000003665	F001535	AGGAG	MPMETQKESSPKHDPTQITEHVEGAHQILKALQEKMGEHPELGAAITKLEMALNLLAVKTGGVL