Scaffold Ga0209550_10276767

Overview

Basic Information

• Taxon OID: 3300027892
• Scaffold ID: Ga0209550_10276767
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1093
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009683	Metagenome / Metatranscriptome	314	Y
F014613	Metagenome / Metatranscriptome	261	Y
F017667	Metagenome / Metatranscriptome	239	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209550_102767671	F017667	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQGPKKAIETTKPALAEFIKEQRPNDPEPIVWDVTAIADQLGAEIIDEI
Ga0209550_102767672	F059096	GGA	MTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVELPR
Ga0209550_102767673	F009683	GAG	MKDIREGEQVSDTQKSLNEWLESAGDTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSTPEDWDDIESDSQS
Ga0209550_102767674	F014613	N/A	IIGVPFFGLYLWALWSSAKARAFNEGYKRGRASVRYTEIIK