Scaffold Ga0209380_10000001

Overview

Basic Information

• Taxon OID: 3300027889
• Scaffold ID: Ga0209380_10000001
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 707186
• Total Scaffold Genes: 679
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 437 (64.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003563	Metagenome / Metatranscriptome	479	Y
F053693	Metagenome / Metatranscriptome	140	Y
F058315	Metagenome / Metatranscriptome	135	Y
F075093	Metagenome / Metatranscriptome	119	Y
F082248	Metagenome / Metatranscriptome	113	Y
F085946	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209380_10000001101	F003563	AGGAG	MNTRGLLKCAGAVVALVIVSACGSGLRQAQGDMAVAPPAATLNTTYVGRTLFMNGRPVTAARLNPLPRYAELVPDARSTKHEYIFNIYGSYASIFKYSKGTAMIGQINGLGGQGCTNVLYGYGKHIFWNAARTNDLILEYRVPKKLLRTLFLDYTFTSSCAMNTSGDLAVGVLLGNSYGPGGQVAIFKNATGSGTVYNTPLSKEYFDGYDPSGNLFADGFGPSYNFALVELPKGSSKFVTIKTSNSPEFPGSVQWDGTYLTVFDQDTSETYQYTLSGTTATLQHTIQFTGASDCAQTWIVTGLLYCADAGNDGGEVFKYPAGGSPAATFTGSFDVPLGVVAAKK
Ga0209380_10000001135	F075093	N/A	VKNGFVLGVVTALGLAACTHNNYMPNVVRLTPNGTKTDPATEPIKSSFTLIAVEDGYTGLFTADTIAGTCWVVQAPVTTHGAWTVTPQGTTCDKHDVEEILVKDTNGNSAATFIRGIGTAGQ
Ga0209380_10000001396	F053693	GGA	MFYAMKKSIGALTVLCAAGMLAACNGNIYGPGPGPTSGPGGNCGGPPSSNQLEVVYPIPNSKKAPPALANIYVATKGSLPPSNQFDFFLSQSNGGSTFTGPFALINASQVPTPHAKPSYPNPTYYASAIAGPYGSSYIIGPNQSVVLLWNNGGANCTPHFQVASFRTKG
Ga0209380_10000001417	F085946	AGGAG	MNAARFSLGVAALCLTAALPAMTVAQTSHVAMAQAAHLTTAHPIRVNGCNPERNVSYNWSGYTPGYFPGPAYGGFYRGYWGYPSVYGPTYYQAPVQNDPTLGIDYANATNVVMTQIEFGLIVRGALVAEVKDVGTFSPGAEIKHKFGLSPNVFPLQTSYAKCVPLKITFEDGSKWKNPHLPQYKSTMYGPPHH
Ga0209380_10000001538	F003563	AGG	MNSTGLVKYAALVAVAICSACGGGSPGTAPTAALNGTYVGRTLFVNGRPVTAARLGVPPRYTQIVPDHHLMGKHFEYVFNIYGSYAAIFHYPKTTQMVGEIAGDGGQGCTNVLYGYGKKIFWNVGGQTQITEYQVPKTPIKTLSFPYSFPTSCAMNTSGDLAVGTFFESGPGGGDVVIFKNASGSGKIYSTPLTAEYFDGYDNQGNLFADGLTASGYFELVELGKGSSTFKTITTSNSVQFPGSVQWDGTYITVFDQLANATYQYTVSGTKATLKGTVSYSGAGDCAQTWIVKGIVYCGDASNGDGEVFKYPAGGSAIAVLGSGLPEPLGVTAANK
Ga0209380_100000016	F082248	GAGG	MFRDPIRTAPLVSDISDVELRLKINRADSALFLESNLRLPHLRVS
Ga0209380_10000001648	F058315	AGGAG	MSVNVTEYMNKFQQESLAALKETQDAGLKAMSSFRAFGKELNEKPGTMPAFENMPTPTQLVEFSFGFASQMLEMRKNFAMRIAEMMVDTQKQTEATFNAATSANRPPSAPVK