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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F082248 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 113 |
| Average Sequence Length | 45 residues |
| Representative Sequence | MFRDPIRTAPLVSDISDVELRLKINRADSALFLESNLRLPHLRVS |
| Number of Associated Samples | 93 |
| Number of Associated Scaffolds | 113 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 81.42 % |
| % of genes near scaffold ends (potentially truncated) | 22.12 % |
| % of genes from short scaffolds (< 2000 bps) | 71.68 % |
| Associated GOLD sequencing projects | 85 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.33 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (50.442 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.389 % of family members) |
| Environment Ontology (ENVO) | Unclassified (23.009 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (62.832 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 32.88% β-sheet: 0.00% Coil/Unstructured: 67.12% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.33 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 113 Family Scaffolds |
|---|---|---|
| PF01261 | AP_endonuc_2 | 24.78 |
| PF07336 | ABATE | 16.81 |
| PF11706 | zf-CGNR | 13.27 |
| PF02616 | SMC_ScpA | 4.42 |
| PF04079 | SMC_ScpB | 4.42 |
| PF00293 | NUDIX | 3.54 |
| PF00817 | IMS | 3.54 |
| PF02347 | GDC-P | 1.77 |
| PF05853 | BKACE | 0.88 |
| PF05229 | SCPU | 0.88 |
| PF02308 | MgtC | 0.88 |
| PF13454 | NAD_binding_9 | 0.88 |
| PF00580 | UvrD-helicase | 0.88 |
| PF12804 | NTP_transf_3 | 0.88 |
| PF04794 | YdjC | 0.88 |
| PF11799 | IMS_C | 0.88 |
| PF00266 | Aminotran_5 | 0.88 |
| PF13570 | PQQ_3 | 0.88 |
| PF01522 | Polysacc_deac_1 | 0.88 |
| PF06202 | GDE_C | 0.88 |
| PF01597 | GCV_H | 0.88 |
| PF07729 | FCD | 0.88 |
| COG ID | Name | Functional Category | % Frequency in 113 Family Scaffolds |
|---|---|---|---|
| COG5516 | Uncharacterized conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding | General function prediction only [R] | 16.81 |
| COG1386 | Chromosome segregation and condensation protein ScpB | Transcription [K] | 4.42 |
| COG1354 | Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family | Replication, recombination and repair [L] | 4.42 |
| COG0389 | Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair | Replication, recombination and repair [L] | 3.54 |
| COG1003 | Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain | Amino acid transport and metabolism [E] | 1.77 |
| COG0403 | Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain | Amino acid transport and metabolism [E] | 1.77 |
| COG0509 | Glycine cleavage system protein H (lipoate-binding) | Amino acid transport and metabolism [E] | 0.88 |
| COG0726 | Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family | Cell wall/membrane/envelope biogenesis [M] | 0.88 |
| COG1074 | 3’-5’ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V) | Replication, recombination and repair [L] | 0.88 |
| COG1285 | Magnesium uptake protein YhiD/SapB, involved in acid resistance | Inorganic ion transport and metabolism [P] | 0.88 |
| COG0210 | Superfamily I DNA or RNA helicase | Replication, recombination and repair [L] | 0.88 |
| COG1802 | DNA-binding transcriptional regulator, GntR family | Transcription [K] | 0.88 |
| COG2186 | DNA-binding transcriptional regulator, FadR family | Transcription [K] | 0.88 |
| COG3174 | Membrane component of predicted Mg2+ transport system, contains DUF4010 domain | Inorganic ion transport and metabolism [P] | 0.88 |
| COG3246 | Uncharacterized conserved protein, DUF849 family | Function unknown [S] | 0.88 |
| COG3394 | Chitooligosaccharide deacetylase ChbG, YdjC/CelG family | Carbohydrate transport and metabolism [G] | 0.88 |
| COG3408 | Glycogen debranching enzyme (alpha-1,6-glucosidase) | Carbohydrate transport and metabolism [G] | 0.88 |
| COG3973 | DNA helicase IV | Replication, recombination and repair [L] | 0.88 |
| COG5430 | Fimbrial subunit ScuA/B, ScuA/B/SCPU domain | Extracellular structures [W] | 0.88 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 50.44 % |
| Unclassified | root | N/A | 49.56 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.39% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 11.50% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 8.85% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 7.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.19% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.31% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 4.42% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 4.42% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.54% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 3.54% |
| Exposed Rock | Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock | 2.65% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 1.77% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.77% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 1.77% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.77% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 1.77% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.77% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 1.77% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 1.77% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 1.77% |
| Attine Ant Fungus Gardens | Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens | 1.77% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 1.77% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.89% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.89% |
| Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil | 0.89% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.89% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.89% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.89% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.89% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.89% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.89% |
| Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.89% |
| Plant Roots | Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots | 0.89% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004631 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005529 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 | Environmental | Open in IMG/M |
| 3300005531 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 | Environmental | Open in IMG/M |
| 3300005533 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 | Environmental | Open in IMG/M |
| 3300005534 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005591 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010867 | Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010869 | Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
| 3300011411 | Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG | Host-Associated | Open in IMG/M |
| 3300012677 | Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ012 MetaG | Host-Associated | Open in IMG/M |
| 3300014489 | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG | Environmental | Open in IMG/M |
| 3300014495 | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300016705 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017975 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300017994 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2 | Environmental | Open in IMG/M |
| 3300018034 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10 | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300019786 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021358 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 | Host-Associated | Open in IMG/M |
| 3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Host-Associated | Open in IMG/M |
| 3300021362 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09 | Environmental | Open in IMG/M |
| 3300021372 | Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01 | Environmental | Open in IMG/M |
| 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Host-Associated | Open in IMG/M |
| 3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021441 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 | Host-Associated | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300021953 | Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07 | Environmental | Open in IMG/M |
| 3300022515 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5 | Environmental | Open in IMG/M |
| 3300022557 | Paint Pots_combined assembly | Environmental | Open in IMG/M |
| 3300022711 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022721 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027505 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027826 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027867 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027965 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028014 | Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2 | Environmental | Open in IMG/M |
| 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030760 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030813 | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030997 | Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Host-Associated | Open in IMG/M |
| 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Host-Associated | Open in IMG/M |
| 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Host-Associated | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032515 | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300032897 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300034125 | Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0062389_1038436891 | 3300004092 | Bog Forest Soil | MFRDPVRTAPLVSDLSDIDLRLKVNRADSALFLESNLRLPHLRVS* |
| Ga0062386_1007595412 | 3300004152 | Bog Forest Soil | MFRDPIRTSPLVSDITDLDLKLRIHRADSALFMASNLRLPHLRVL* |
| Ga0058899_116828932 | 3300004631 | Forest Soil | GFSMFRDPIRTAPLVSDISDVDLRLKINRADAALFLESNLRLPHLRIS* |
| Ga0070714_1000882042 | 3300005435 | Agricultural Soil | MFRDPVRTAPLVSDISDVDLKLRINRADSALFLESNLRLPHLRVT* |
| Ga0070741_108178752 | 3300005529 | Surface Soil | MFRDPVRTAPLVSDINDVDLKLRINRADSALFLESNLRLPHLRVT* |
| Ga0070738_1000640111 | 3300005531 | Surface Soil | MFRDPIRNAPFVSDVNDVELRLRIQRADSALFRESNLRLPHLRVH* |
| Ga0070734_104552612 | 3300005533 | Surface Soil | MFREPIRTAPLVADIGDIDFRLKINRADSALFLESNLRLPHLRVT* |
| Ga0070735_103951132 | 3300005534 | Surface Soil | MFRDPIRNSPLVSDVSDVDLRMKIQRADSALFLESNFRLPHLRVA* |
| Ga0070731_100104173 | 3300005538 | Surface Soil | MFRDPVRTAPLVSDIHDVDLKLKVLRADSALFMESNMRLPHLRVQ* |
| Ga0070731_100160983 | 3300005538 | Surface Soil | MFRDPVRTAPLVSDIQDVDLKLKIRRADSALFMESSMRLPHLRVQ* |
| Ga0070733_1000006429 | 3300005541 | Surface Soil | MFRDPVRNAPLVSDLSDIDLRLKVMRADSALFLESNLRLPHLRVS* |
| Ga0070733_101149601 | 3300005541 | Surface Soil | MFRDPVRTAPLVSDIQDVGLKLKIRRADSALFNESSMRLPHLRVQ* |
| Ga0070733_102331382 | 3300005541 | Surface Soil | MFRDPIRTAPFVSDISDVDLRLRINRADSALFVESNLRLPHLRVM* |
| Ga0070761_101969342 | 3300005591 | Soil | MFRDPVRTAPLVSDVTDVELRLKVNRADSALFLESNLRLPHLRVS* |
| Ga0070762_1000185910 | 3300005602 | Soil | MFRDPVRTAPLVSDVTDVELRLRVNRADSALFLESSLRLPHLRVA* |
| Ga0070764_1000004430 | 3300005712 | Soil | MFRDPIRTAPLVSDIGDIDLRLKINRADSALFLESNLRLPHLRIS* |
| Ga0070764_100653193 | 3300005712 | Soil | MFRDPVRTAPLVSDISDIDLRLKINRADSALFLESSLRLPHLRVQ* |
| Ga0066903_1000553682 | 3300005764 | Tropical Forest Soil | MFRDPVRTAPLVSDIHDIDLKLKILRADTALFMESNLRLPHLRVQ* |
| Ga0070766_1000001673 | 3300005921 | Soil | MFRDPIRTAPLVSDISDVELRLKINRADSALFLESNLRLPHLRVS* |
| Ga0073928_100288307 | 3300006893 | Iron-Sulfur Acid Spring | MFRDPIRTAPFVSDISDVNLRLRINRADSALFVESNLRLPHLRVM* |
| Ga0126379_102907341 | 3300010366 | Tropical Forest Soil | LVSDIHDIDLKLKILRADTALFMESNLRLPHLRVQ* |
| Ga0134128_118855202 | 3300010373 | Terrestrial Soil | MLQRIPVFHDPIRLTPLVRDISDVSLRLKVNRADSALFAATEMRLPHLRVV* |
| Ga0136449_1002220255 | 3300010379 | Peatlands Soil | MFRDPVRTAPLVSDITDIALRLKINRADSALFLESNLRLPHLRVS* |
| Ga0126347_13616062 | 3300010867 | Boreal Forest Soil | ANMFQDPIRTTPFVQDISDVTLRLKVQRADSALFAVSDLRLPHLRVL* |
| Ga0126359_15991721 | 3300010869 | Boreal Forest Soil | QEANMFQDPIRTTPFVQDISDVTLRLKVQRADSALFAVSDLRLPHLRVL* |
| Ga0150983_144416631 | 3300011120 | Forest Soil | VKRFTMFRDPVRTAPLVSDISDVDLRLKITRADSALFLESNIRLPHLRVA* |
| Ga0153933_10368242 | 3300011411 | Attine Ant Fungus Gardens | MFRDPIRSAPFVSDIGDVDLRLRIKRADSALFVDSSLRLPHLRVM* |
| Ga0153928_10936052 | 3300012677 | Attine Ant Fungus Gardens | MFRDPIRNAPLVNDISDVDLRLKIRRADSALFLESNLRLPHLRVA* |
| Ga0182018_1000269113 | 3300014489 | Palsa | MFRDPVRTAPLVSDVTDVELRLKVNRADSALFLESSLRLPHLRVS* |
| Ga0182015_106980282 | 3300014495 | Palsa | RTAPLVSDVTDVELRLKVNRADSALFLESNLRLPHLRVS* |
| Ga0182024_113736042 | 3300014501 | Permafrost | MFRDPIRTAPLVSDVTDVELRLKVNRADSALFLESSLRLPHLRVS* |
| Ga0181507_11385821 | 3300016705 | Peatland | TMFRDPVRTAPLVSDLSDVDLRLKVNRADSALFLESNLRLPHLRVS |
| Ga0187779_112670242 | 3300017959 | Tropical Peatland | MFRDPIRNAPLVKDIHDVDLRLKIKRADSALFMESNLRLPHLRVL |
| Ga0187783_1000023628 | 3300017970 | Tropical Peatland | MFRDPIRSAPLVADIADVDLRLKIQRADSALFTESSMRLPHLRVL |
| Ga0187783_100068207 | 3300017970 | Tropical Peatland | MFRDPVRTAPLVSDVSDVELKLKINRADSALFLESNLRLPHLRIQ |
| Ga0187783_100500424 | 3300017970 | Tropical Peatland | MFTDPIRTAPLVADISDVDLRLKIRRADSALFNESTMRLPHLRVL |
| Ga0187783_103392762 | 3300017970 | Tropical Peatland | MFRDPIRNRPLVSDISDIDLRLKVSRADSALFLESNLRLPHLRVS |
| Ga0187783_112459072 | 3300017970 | Tropical Peatland | MFRDHIRNAPLVSDINDVDLKLKINRADSALFSESNLRLPHLRVS |
| Ga0187781_102059662 | 3300017972 | Tropical Peatland | MFRDPVRTAPLVSDVSDVDLKLKINRADSALFLESNLRLPHLRIQ |
| Ga0187781_108862942 | 3300017972 | Tropical Peatland | MFRNPVRTAPLVNDVSDVDLRLKVQRADSALFLESNLRLPHLRIQ |
| Ga0187782_112114272 | 3300017975 | Tropical Peatland | MFRNPVRTAPLVNDVSDVDLRLKVQRADSALFLES |
| Ga0187822_103859361 | 3300017994 | Freshwater Sediment | MFHDPIRSTPLVSDISDVSLRLKVRRADSALFAASDMRLPHLRVW |
| Ga0187863_100025787 | 3300018034 | Peatland | MFRDPVRTAPLVSDLSDVDLRLKVNRADSALFLESNLRLPHLRVS |
| Ga0187772_108563572 | 3300018085 | Tropical Peatland | MFRDPIRNAPLVNDISDVDLRLKVRRADSALFLESNLRLPHLRVS |
| Ga0182025_13369732 | 3300019786 | Permafrost | MFRDPVRTAPLVSDLSDIDLRLKVNRADSALFLESNLRLPHLRVA |
| Ga0210395_100494154 | 3300020582 | Soil | MFRDPVRTAPLVSDVTDVELRLKVNRADSALFLESNLRLPHLRVS |
| Ga0210395_101650582 | 3300020582 | Soil | MFRDPIRSAPLVSDISDVALRLKIRRADSALFVESNLRLPHLRVL |
| Ga0210401_114114582 | 3300020583 | Soil | MFRDPIRTAPLVSDIGDVELRLRINRADSVLFLESNLRLPHLRVA |
| Ga0210388_100168471 | 3300021181 | Soil | MFRDPVRTAPLVSDISDIDLRLKINRADSALFLESSLRLPHLRVQ |
| Ga0210388_104120753 | 3300021181 | Soil | VSQMFRDPIRSAPLVSDISDVALRLKIRRADSALFVESNLRLPHLRVL |
| Ga0213873_100005646 | 3300021358 | Rhizosphere | MFRDPIRTAPLVADIGDIDLRLKINRADSALFLESNLRLPHLRVI |
| Ga0213873_100299822 | 3300021358 | Rhizosphere | MFRDPIRTAPFVSDISDVDLRLRINRADSALFVESNLRLPHLRVM |
| Ga0213873_101233741 | 3300021358 | Rhizosphere | MFRDPVRTAPLVSDVSDVDLRLKVKRADSALFLESNFRLPHLRVV |
| Ga0213872_104642242 | 3300021361 | Rhizosphere | MFRDPIRTAPFVSDISDVELRLKIRRADSALFTESNLRLPHLRVL |
| Ga0213882_102128572 | 3300021362 | Exposed Rock | MFRDPIRTAPLVADIGDIDLRLKVNRADSILFLESNLRLPHLRVT |
| Ga0213882_102499871 | 3300021362 | Exposed Rock | MFRDPIRTAPLVADIGDIDFRLKINRADSALFLESNLRLPHLRVT |
| Ga0213877_100675022 | 3300021372 | Bulk Soil | MFRDPVYTRPFVQDVSDVNLRLRIQRADSALFHEPGMRFPNLRIW |
| Ga0213875_101544952 | 3300021388 | Plant Roots | MFRDPIRTAPFVSDISDVDLRLKIQRADSALFVESNLRLPHLRVM |
| Ga0210393_111516122 | 3300021401 | Soil | MFRDPVRTAPLVSDVTDVELRLRVNRADSALFLESSLRLPHLRVA |
| Ga0210397_113885842 | 3300021403 | Soil | MFRDPIRSAPLVSDISDVALRLKIRRADSALFLESNLRLPHLRVL |
| Ga0210391_108684921 | 3300021433 | Soil | MFRDPVRTAPLVSDLSDVDLRLKINRADSALFLESNLRLPHLRVS |
| Ga0213871_101928681 | 3300021441 | Rhizosphere | MFRDPVRNAPLVNDITDIDLRLKVQRADTALFLESNLRLPHLRVS |
| Ga0210392_107320662 | 3300021475 | Soil | MFRDPVRNAPLVSDVSDVELRLRVGRADSMLFLESNLRLPHLRVS |
| Ga0126371_121450562 | 3300021560 | Tropical Forest Soil | MFRDPVRTAPLVSDIHDIDLKLKILRADTALFMESNLRLPHLRVQ |
| Ga0213880_100596311 | 3300021953 | Exposed Rock | MFRDPVRTAPLVSDIHDVDLKLRIRRADSALFLESSMRLPHLRVQ |
| Ga0224546_10047792 | 3300022515 | Soil | MFRDPVRTAPLVSDVTDVELRLKVNRADSALFLESSLRLPHLRVS |
| Ga0212123_101032343 | 3300022557 | Iron-Sulfur Acid Spring | MFRDPIRTAPFVSDISDVNLRLRINRADSALFVESNLRLPHLRVM |
| Ga0242674_10299171 | 3300022711 | Soil | MFRDPVRTAPLVSDISDIDLRLKINRADSALFLESSLRLPHLRV |
| Ga0242666_11543772 | 3300022721 | Soil | FRQEDYNMFRDPVRTAPLVSDVTDVELRLKVNRADSALFLESNLRLPHLRVS |
| Ga0207692_105785891 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MFRDPVRTAPLVSDISDVDLKLRINRADSALFLES |
| Ga0209218_10440852 | 3300027505 | Forest Soil | MFRDPIRTAPLVMDIADVELRLKVNRADSALFLESNLRLPHLRIL |
| Ga0209060_104544222 | 3300027826 | Surface Soil | MFRDPIRNSPLVSDVSDVDLRMKIQRADSALFLESNFRLPHLRVA |
| Ga0209167_1000008262 | 3300027867 | Surface Soil | MFRDPVRNAPLVSDLSDIDLRLKVMRADSALFLESNLRLPHLRVS |
| Ga0209579_100668934 | 3300027869 | Surface Soil | MFRDPVRTAPLVSDIQDVDLKLKIRRADSALFMESSMRLPHLRVQ |
| Ga0209169_100018074 | 3300027879 | Soil | MFRDPIRTAPLVSDIGDIDLRLKINRADSALFLESNLRLPHLRIS |
| Ga0209380_100000016 | 3300027889 | Soil | MFRDPIRTAPLVSDISDVELRLKINRADSALFLESNLRLPHLRVS |
| Ga0209380_102808341 | 3300027889 | Soil | MFRDPVRTAPLVSDVTDVELRLKVNRADSALFLESNLRLPHLR |
| Ga0209006_108019102 | 3300027908 | Forest Soil | MFRDPVRNAPLVSDVSDVELRLKVGRADSMLFLESNMRLPHLRVS |
| Ga0209062_10357784 | 3300027965 | Surface Soil | MFRDPIRNAPFVSDVNDVELRLRIQRADSALFRESNLRLPHLRVH |
| Ga0265345_1047292 | 3300028014 | Plant Litter | MFRDPVRNAPLVSDISDVELRLKVGRADSMLFLESNLRLPHLRVS |
| Ga0265338_100001626 | 3300028800 | Rhizosphere | MFRDPVRTAPLVSDISDVDLKLRVNRADSALFLESNLRLPHLRVT |
| Ga0265338_100639312 | 3300028800 | Rhizosphere | MFRDPIRSTPMVSDIGDVELRTRIQRADTALFREPGLRLPHLRIA |
| Ga0308309_105089992 | 3300028906 | Soil | MFRDPVRTAPLVSDVTDVGLRLKVNRADTALFLESNLRLPHLRVS |
| Ga0222749_104014452 | 3300029636 | Soil | MFRDPIRTTPLVSDISDVDLRLKVNRADSALFLESNLRLPHLRVM |
| Ga0311340_106005532 | 3300029943 | Palsa | TAPLVGDVLDTERRLKVVRADRVLFLESNLRLPQLRIL |
| Ga0311338_110574421 | 3300030007 | Palsa | MFRDPIRTAPLVGDVLDTERRLKVVRADRVLFLESNLRLPQLRIL |
| Ga0265762_10226672 | 3300030760 | Soil | MFRDPIRTAPLVSDLSDIDLRLKVTRADSALFLESNLRLPHLRVA |
| Ga0265750_10053973 | 3300030813 | Soil | MFRDPVRTAPLVSDLSDVELRLKVNRADSALFLESNLRLPHLRVS |
| Ga0073997_119434443 | 3300030997 | Soil | VTMFRDPVRTAPLVSDVSDVDLKLRVNRADSALFLESNLRLPHLRIA |
| Ga0265760_100571232 | 3300031090 | Soil | MFRDPIRTAPLVSDISDVELKLKINRADSALFLESNLRLPHLRIS |
| Ga0265760_103316812 | 3300031090 | Soil | RTAPLVNDISDVDLRLKILRADSALFLESSLRLPHLRVA |
| Ga0302325_117420342 | 3300031234 | Palsa | MFRDPVRTAPLVSDVSDVDLRLKVNRADSALFLESNLRLPHLRVS |
| Ga0265325_100678704 | 3300031241 | Rhizosphere | RSTPMVSDIGDVELRTRIQRADTALFREPGLRLPHLRIA |
| Ga0265331_102381242 | 3300031250 | Rhizosphere | RDPVRTAPLVSDISDVDLKLRVNRADSALFLESNLRLPHLRVT |
| Ga0265327_102495062 | 3300031251 | Rhizosphere | HSSRGCHMFRDPVRTAPLVSDISDVDLKLRVNRADSALFLESNLRLPHLRVT |
| Ga0302326_117981161 | 3300031525 | Palsa | MFRDPIRTAPLVSDVSDVDLRLKVNRADSALFLESNLRLPHLRVS |
| Ga0318541_102995392 | 3300031545 | Soil | MFRDPIRTAPLVADIGDVDLRLKINRADSALFLESNLRLPHLRVV |
| Ga0310686_1020147902 | 3300031708 | Soil | MFRDPVRTAPLVSDISDIDLRLKINRADSALFLESNLRLPHLRVM |
| Ga0310686_1189668502 | 3300031708 | Soil | MFRDPVRTAPLVSDVTDVGLRLKVNRADSALFLESNLRLPHLRVS |
| Ga0310686_1192339812 | 3300031708 | Soil | MFRDPVRTRPLVSDISDVSLRLNVNRADSALFLESNLRLPHLRVA |
| Ga0307476_1000003922 | 3300031715 | Hardwood Forest Soil | MFRDPIRTAPFVSDISDVDLRLKIQRADSALFVESNFRLPHLRVM |
| Ga0306926_101786531 | 3300031954 | Soil | TAPLVADIGDVDLRLKINRADSALFLESNLRLPHLRVV |
| Ga0306922_105273591 | 3300032001 | Soil | MFRDPIRTAPLVADIGDVDLRLKINRADSALFLESNLRLPHL |
| Ga0311301_101915432 | 3300032160 | Peatlands Soil | MFRDPVRTAPLVSDITDIALRLKINRADSALFLESNLRLPHLRVS |
| Ga0348332_103342942 | 3300032515 | Plant Litter | FQMFRDPVRTAPLVSDISDIDLRLKINRADSALFLESNLRLPHLRVM |
| Ga0348332_129029452 | 3300032515 | Plant Litter | VKRITTMFRDPIRTAPLVSDLSDIDLRLKVTRADSALFLESNLRLPHLRVA |
| Ga0335078_126688252 | 3300032805 | Soil | MFRDPIRTAPLVSDINDVNLRLKINRADSALFLESNLRLPHLRVQ |
| Ga0335069_100127273 | 3300032893 | Soil | MFRDPIRNAPLVSDINDVGLRLKIKRADSALFLESSLRLPHLRVQ |
| Ga0335074_106102762 | 3300032895 | Soil | MFRDPVRSTPMVGDISDVNLRLKITRADSALFRSGDLRFPSLRVW |
| Ga0335075_100587885 | 3300032896 | Soil | MFRDPVRTAPLVSDVSDVELRLKINRADSALFLESTLRLPHLRVM |
| Ga0335071_103746153 | 3300032897 | Soil | TTFVKRFEAMFRDPIRNAPLVSDINDVGLRLKIKRADSALFLESSLRLPHLRVQ |
| Ga0335083_105632142 | 3300032954 | Soil | MFRDPIRSAPLVSDISDVELRLKITRADSALFTESNLRLPHLRIQ |
| Ga0370484_0039446_937_1074 | 3300034125 | Untreated Peat Soil | MFRDPVRTAPLVSDISDVALRLKVNRADSALFLESNLRLPHLRVT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |