NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209713_10337846

Scaffold Ga0209713_10337846


Overview

Basic Information
Taxon OID3300027883 Open in IMG/M
Scaffold IDGa0209713_10337846 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8697Long. (o)8.1122Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010615Metagenome / Metatranscriptome301Y
F055556Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0209713_103378462F055556GAGMKNHKENNNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIATVIAGL
Ga0209713_103378464F010615N/AMKTIQLEGIELRPDKYFDITVKAEAVTTQCECSSEAGESQVTEAWEERDLDGFEIVSLVYWPNEDTPVDFPTIVLTHDDRAIIFEETLRYI

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