Metagenome / Metatranscriptome Family F055556

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F055556
Family Type	Metagenome / Metatranscriptome
Number of Sequences	138
Average Sequence Length	46 residues
Representative Sequence	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Number of Associated Samples	102
Number of Associated Scaffolds	138

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.72 %
% of genes near scaffold ends (potentially truncated)	44.20 %
% of genes from short scaffolds (< 2000 bps)	82.61 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.145 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (62.319 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.232 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 72.34% β-sheet: 0.00% Coil/Unstructured: 27.66%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 138 Family Scaffolds
PF12705	PDDEXK_1	7.97
PF00145	DNA_methylase	1.45
PF13264	DUF4055	0.72
PF12965	DUF3854	0.72

COG ID	Name	Functional Category	% Frequency in 138 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.45

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
All Organisms	root	All Organisms	39.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Viruses	superkingdom	All Organisms → Viruses	32.61 %
cellular organisms	root	All Organisms → cellular organisms	7.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	13.04 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.52 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	13.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.35 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.72 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	13.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.17 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	0.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13.04 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.17 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.72 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	10.14 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.17 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1.45 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	0.72 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.72 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Verrucomicrobia phage P8625	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	10.14 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	2.17 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	0.72 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.72 %
Myoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	0.72 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.72 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Verrucomicrobia phage P8625	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	10.14 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2.17 %
Libanvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus	0.72 %
Methanosphaera	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanosphaera	0.72 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.72 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.72 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Verrucomicrobia phage P8625	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	10.14 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2.17 %
unclassified Libanvirus	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus	0.72 %
unclassified Methanosphaera	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanosphaera → unclassified Methanosphaera	0.72 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.72 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.72 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.14 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.57 %
Verrucomicrobia phage P8625	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	10.14 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2.17 %
Methanosphaera sp.	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanosphaera → unclassified Methanosphaera → Methanosphaera sp.	0.72 %
Cyanophage P-RSM6	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Cyanophage P-RSM6	0.72 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.72 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.72 %
Verrucomicrobia bacterium LW23	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	0.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2100351011\|ASMM170b_GJFD58A01ECM41	Not Available	511	Open in IMG/M
3300000101\|DelMOSum2010_c10135851	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Cyanophage P-RSM6	933	Open in IMG/M
3300000101\|DelMOSum2010_c10174065	Not Available	755	Open in IMG/M
3300000101\|DelMOSum2010_c10186696	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	712	Open in IMG/M
3300000101\|DelMOSum2010_c10279460	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	509	Open in IMG/M
3300000115\|DelMOSum2011_c10181187	Not Available	600	Open in IMG/M
3300000116\|DelMOSpr2010_c10100133	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	1095	Open in IMG/M
3300000117\|DelMOWin2010_c10032066	All Organisms → Viruses → Predicted Viral	2544	Open in IMG/M
3300001347\|JGI20156J14371_10076243	Not Available	1205	Open in IMG/M
3300001347\|JGI20156J14371_10127264	Not Available	754	Open in IMG/M
3300001352\|JGI20157J14317_10050197	All Organisms → Viruses → Predicted Viral	1929	Open in IMG/M
3300004279\|Ga0066605_10326837	Not Available	560	Open in IMG/M
3300004448\|Ga0065861_1043021	Not Available	942	Open in IMG/M
3300004448\|Ga0065861_1054148	Not Available	937	Open in IMG/M
3300004448\|Ga0065861_1088321	Not Available	533	Open in IMG/M
3300004460\|Ga0066222_1018738	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300004460\|Ga0066222_1021160	Not Available	1219	Open in IMG/M
3300005590\|Ga0070727_10600781	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	616	Open in IMG/M
3300005941\|Ga0070743_10051237	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	1407	Open in IMG/M
3300005942\|Ga0070742_10031549	All Organisms → Viruses → Predicted Viral	1421	Open in IMG/M
3300006029\|Ga0075466_1081088	Not Available	904	Open in IMG/M
3300006029\|Ga0075466_1186837	Not Available	518	Open in IMG/M
3300006802\|Ga0070749_10082915	All Organisms → Viruses → Predicted Viral	1913	Open in IMG/M
3300006803\|Ga0075467_10355713	Not Available	769	Open in IMG/M
3300006916\|Ga0070750_10206866	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	866	Open in IMG/M
3300007231\|Ga0075469_10059423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium LW23	1128	Open in IMG/M
3300007558\|Ga0102822_1019388	All Organisms → Viruses → Predicted Viral	1647	Open in IMG/M
3300007953\|Ga0105738_1048495	Not Available	685	Open in IMG/M
3300009003\|Ga0102813_1160690	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	699	Open in IMG/M
3300009024\|Ga0102811_1030622	All Organisms → Viruses → Predicted Viral	2060	Open in IMG/M
3300009024\|Ga0102811_1254638	Not Available	656	Open in IMG/M
3300009071\|Ga0115566_10042858	All Organisms → Viruses → Predicted Viral	3127	Open in IMG/M
3300009074\|Ga0115549_1303663	Not Available	504	Open in IMG/M
3300009076\|Ga0115550_1216279	Not Available	639	Open in IMG/M
3300009076\|Ga0115550_1259658	Not Available	566	Open in IMG/M
3300009079\|Ga0102814_10087446	Not Available	1712	Open in IMG/M
3300009079\|Ga0102814_10771200	Not Available	530	Open in IMG/M
3300009086\|Ga0102812_10633906	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	587	Open in IMG/M
3300009086\|Ga0102812_10656081	Not Available	577	Open in IMG/M
3300009172\|Ga0114995_10051828	Not Available	2341	Open in IMG/M
3300009434\|Ga0115562_1148332	Not Available	877	Open in IMG/M
3300009435\|Ga0115546_1152655	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	814	Open in IMG/M
3300009435\|Ga0115546_1222945	Not Available	649	Open in IMG/M
3300009435\|Ga0115546_1254454	Not Available	602	Open in IMG/M
3300009435\|Ga0115546_1325210	Not Available	523	Open in IMG/M
3300009441\|Ga0115007_10921971	Not Available	597	Open in IMG/M
3300009442\|Ga0115563_1157200	Not Available	908	Open in IMG/M
3300009447\|Ga0115560_1038220	All Organisms → Viruses → Predicted Viral	2198	Open in IMG/M
3300009467\|Ga0115565_10222640	Not Available	866	Open in IMG/M
3300009497\|Ga0115569_10116248	All Organisms → Viruses → Predicted Viral	1326	Open in IMG/M
3300009498\|Ga0115568_10076710	All Organisms → Viruses → Predicted Viral	1696	Open in IMG/M
3300009507\|Ga0115572_10011387	All Organisms → cellular organisms → Bacteria	6486	Open in IMG/M
3300009508\|Ga0115567_10326187	Not Available	957	Open in IMG/M
3300009606\|Ga0115102_10905036	All Organisms → Viruses → Predicted Viral	2425	Open in IMG/M
3300009785\|Ga0115001_10077419	Not Available	2182	Open in IMG/M
3300010392\|Ga0118731_113638238	Not Available	960	Open in IMG/M
3300013010\|Ga0129327_10222493	Not Available	958	Open in IMG/M
3300013010\|Ga0129327_10729831	Not Available	557	Open in IMG/M
3300017697\|Ga0180120_10319366	Not Available	619	Open in IMG/M
3300017697\|Ga0180120_10364059	Not Available	571	Open in IMG/M
3300017751\|Ga0187219_1116008	Not Available	798	Open in IMG/M
3300018415\|Ga0181559_10070694	Not Available	2243	Open in IMG/M
3300018415\|Ga0181559_10102768	All Organisms → Viruses → Predicted Viral	1748	Open in IMG/M
3300018417\|Ga0181558_10428419	Not Available	697	Open in IMG/M
3300018420\|Ga0181563_10757504	Not Available	534	Open in IMG/M
3300020166\|Ga0206128_1041851	All Organisms → Viruses → Predicted Viral	2307	Open in IMG/M
3300020169\|Ga0206127_1000851	All Organisms → cellular organisms → Bacteria → Proteobacteria	35657	Open in IMG/M
3300020169\|Ga0206127_1131672	Not Available	996	Open in IMG/M
3300020175\|Ga0206124_10256990	Not Available	675	Open in IMG/M
3300020185\|Ga0206131_10393189	Not Available	581	Open in IMG/M
3300020187\|Ga0206130_10060366	All Organisms → Viruses → Predicted Viral	2569	Open in IMG/M
3300020385\|Ga0211677_10036752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2319	Open in IMG/M
3300021957\|Ga0222717_10011714	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6060	Open in IMG/M
3300021957\|Ga0222717_10058104	Not Available	2490	Open in IMG/M
3300021957\|Ga0222717_10100099	All Organisms → Viruses → Predicted Viral	1812	Open in IMG/M
3300021957\|Ga0222717_10162167	All Organisms → Viruses → Predicted Viral	1352	Open in IMG/M
3300021957\|Ga0222717_10239297	All Organisms → Viruses → Predicted Viral	1059	Open in IMG/M
3300021957\|Ga0222717_10595832	Not Available	580	Open in IMG/M
3300021959\|Ga0222716_10002507	All Organisms → cellular organisms → Bacteria → Proteobacteria	14872	Open in IMG/M
3300021959\|Ga0222716_10106376	All Organisms → Viruses → Predicted Viral	1887	Open in IMG/M
3300021960\|Ga0222715_10023064	All Organisms → Viruses → Predicted Viral	4613	Open in IMG/M
3300022164\|Ga0212022_1044204	Not Available	689	Open in IMG/M
3300022178\|Ga0196887_1026482	All Organisms → Viruses → Predicted Viral	1663	Open in IMG/M
3300022178\|Ga0196887_1083828	Not Available	740	Open in IMG/M
3300022220\|Ga0224513_10128517	Not Available	977	Open in IMG/M
3300022221\|Ga0224506_10255840	Not Available	796	Open in IMG/M
(restricted) 3300022913\|Ga0233404_10022222	Not Available	1432	Open in IMG/M
3300022923\|Ga0255783_10311757	Not Available	633	Open in IMG/M
(restricted) 3300022938\|Ga0233409_10092361	Not Available	947	Open in IMG/M
(restricted) 3300023085\|Ga0233406_10097195	Not Available	509	Open in IMG/M
(restricted) 3300023112\|Ga0233411_10099052	Not Available	932	Open in IMG/M
(restricted) 3300023271\|Ga0233403_10178225	Not Available	623	Open in IMG/M
3300023701\|Ga0228685_1078458	Not Available	503	Open in IMG/M
(restricted) 3300024059\|Ga0255040_10083531	All Organisms → Viruses → Predicted Viral	1225	Open in IMG/M
(restricted) 3300024059\|Ga0255040_10252961	Not Available	730	Open in IMG/M
(restricted) 3300024059\|Ga0255040_10398069	Not Available	584	Open in IMG/M
3300024185\|Ga0228669_1073023	Not Available	668	Open in IMG/M
3300024334\|Ga0228671_1013336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2483	Open in IMG/M
3300024420\|Ga0228632_1114186	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	631	Open in IMG/M
3300025508\|Ga0208148_1002264	All Organisms → cellular organisms → Bacteria → Proteobacteria	6888	Open in IMG/M
3300025543\|Ga0208303_1009569	All Organisms → Viruses → Predicted Viral	3042	Open in IMG/M
3300025543\|Ga0208303_1117840	Not Available	539	Open in IMG/M
3300025620\|Ga0209405_1158499	Not Available	576	Open in IMG/M
3300025621\|Ga0209504_1049466	Not Available	1297	Open in IMG/M
3300025621\|Ga0209504_1107431	Not Available	721	Open in IMG/M
3300025621\|Ga0209504_1121987	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	654	Open in IMG/M
3300025632\|Ga0209194_1011706	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanosphaera → unclassified Methanosphaera → Methanosphaera sp.	3373	Open in IMG/M
3300025641\|Ga0209833_1014973	Not Available	3290	Open in IMG/M
3300025645\|Ga0208643_1141310	Not Available	619	Open in IMG/M
3300025652\|Ga0208134_1079810	Not Available	950	Open in IMG/M
3300025806\|Ga0208545_1106734	Not Available	723	Open in IMG/M
3300025816\|Ga0209193_1047713	All Organisms → Viruses → Predicted Viral	1202	Open in IMG/M
3300025860\|Ga0209119_1252349	Not Available	651	Open in IMG/M
3300025874\|Ga0209533_1334357	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	570	Open in IMG/M
3300025881\|Ga0209309_10140389	Not Available	1239	Open in IMG/M
3300025887\|Ga0208544_10266737	Not Available	679	Open in IMG/M
3300025892\|Ga0209630_10159493	All Organisms → Viruses → Predicted Viral	1137	Open in IMG/M
3300027192\|Ga0208673_1057102	Not Available	621	Open in IMG/M
3300027525\|Ga0208437_1034994	All Organisms → Viruses → Predicted Viral	1238	Open in IMG/M
3300027525\|Ga0208437_1155115	Not Available	512	Open in IMG/M
3300027687\|Ga0209710_1031037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	2632	Open in IMG/M
3300027751\|Ga0208304_10236120	Not Available	651	Open in IMG/M
3300027751\|Ga0208304_10358249	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	503	Open in IMG/M
3300027752\|Ga0209192_10226176	Not Available	701	Open in IMG/M
3300027753\|Ga0208305_10359999	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	503	Open in IMG/M
3300027757\|Ga0208671_10081163	All Organisms → Viruses → Predicted Viral	1195	Open in IMG/M
3300027757\|Ga0208671_10107598	All Organisms → Viruses → Predicted Viral	1022	Open in IMG/M
(restricted) 3300027837\|Ga0255041_10157236	Not Available	785	Open in IMG/M
(restricted) 3300027861\|Ga0233415_10237672	Not Available	848	Open in IMG/M
(restricted) 3300027881\|Ga0255055_10326539	Not Available	829	Open in IMG/M
3300027883\|Ga0209713_10337846	Not Available	1000	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10009030	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3759	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10150370	Not Available	963	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10390494	Not Available	607	Open in IMG/M
3300028129\|Ga0228634_1025671	Not Available	1710	Open in IMG/M
3300028419\|Ga0228625_1044898	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	997	Open in IMG/M
3300031519\|Ga0307488_10449973	Not Available	782	Open in IMG/M
3300031597\|Ga0302116_1138566	Not Available	764	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	25.36%
Pelagic	Environmental → Aquatic → Marine → Pelagic	21.74%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.22%
Unclassified	Environmental → Aquatic → Marine → Unclassified	10.14%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	10.14%
Inlet	Environmental → Aquatic → Marine → Inlet	7.25%
Oceanic	Environmental → Aquatic → Marine → Oceanic	5.07%
Strait	Environmental → Aquatic → Marine → Strait	3.62%
Sediment	Environmental → Aquatic → Marine → Sediment	1.45%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	23.91%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	21.74%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	11.59%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	10.14%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	10.14%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	7.25%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	5.07%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.62%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	3.62%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.45%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.45%

Habitat	Taxonomy	Distribution
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	17.39%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.59%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	11.59%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	7.25%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	6.52%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	5.07%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	5.07%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	4.35%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	4.35%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	4.35%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	3.62%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.62%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	3.62%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.90%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.17%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	1.45%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.45%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.72%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.72%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.72%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.72%
Coastal Water And Sediment	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment	0.72%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2100351011	Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cm	Environmental	Open in IMG/M
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001347	Pelagic Microbial community sample from North Sea - COGITO 998_met_06	Environmental	Open in IMG/M
3300001352	Pelagic Microbial community sample from North Sea - COGITO 998_met_07	Environmental	Open in IMG/M
3300004279	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental	Open in IMG/M
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental	Open in IMG/M
3300005942	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300007231	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA	Environmental	Open in IMG/M
3300007558	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733	Environmental	Open in IMG/M
3300007953	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3um	Environmental	Open in IMG/M
3300009003	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725	Environmental	Open in IMG/M
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009074	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430	Environmental	Open in IMG/M
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental	Open in IMG/M
3300009079	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009441	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009447	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509	Environmental	Open in IMG/M
3300009467	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530	Environmental	Open in IMG/M
3300009497	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503	Environmental	Open in IMG/M
3300009498	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009606	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017751	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)	Environmental	Open in IMG/M
3300018415	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018417	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental	Open in IMG/M
3300020169	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1	Environmental	Open in IMG/M
3300020175	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2	Environmental	Open in IMG/M
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental	Open in IMG/M
3300020187	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1	Environmental	Open in IMG/M
3300020385	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300022164	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)	Environmental	Open in IMG/M
3300022178	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)	Environmental	Open in IMG/M
3300022220	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21	Environmental	Open in IMG/M
3300022221	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1	Environmental	Open in IMG/M
3300022913 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MG	Environmental	Open in IMG/M
3300022923	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG	Environmental	Open in IMG/M
3300022938 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG	Environmental	Open in IMG/M
3300023085 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_5_MG	Environmental	Open in IMG/M
3300023112 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MG	Environmental	Open in IMG/M
3300023271 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_1_MG	Environmental	Open in IMG/M
3300023701	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 47R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024059 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2	Environmental	Open in IMG/M
3300024185	Seawater microbial communities from Monterey Bay, California, United States - 84D	Environmental	Open in IMG/M
3300024334	Seawater microbial communities from Monterey Bay, California, United States - 89D	Environmental	Open in IMG/M
3300024420	Seawater microbial communities from Monterey Bay, California, United States - 40D	Environmental	Open in IMG/M
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025620	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)	Environmental	Open in IMG/M
3300025621	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)	Environmental	Open in IMG/M
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental	Open in IMG/M
3300025641	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)	Environmental	Open in IMG/M
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental	Open in IMG/M
3300025652	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025860	Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)	Environmental	Open in IMG/M
3300025874	Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)	Environmental	Open in IMG/M
3300025881	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 (SPAdes)	Environmental	Open in IMG/M
3300025887	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025892	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)	Environmental	Open in IMG/M
3300027192	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.715 (SPAdes)	Environmental	Open in IMG/M
3300027525	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes)	Environmental	Open in IMG/M
3300027687	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)	Environmental	Open in IMG/M
3300027751	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)	Environmental	Open in IMG/M
3300027752	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)	Environmental	Open in IMG/M
3300027753	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)	Environmental	Open in IMG/M
3300027757	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)	Environmental	Open in IMG/M
3300027837 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3	Environmental	Open in IMG/M
3300027861 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG	Environmental	Open in IMG/M
3300027881 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27	Environmental	Open in IMG/M
3300027883	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental	Open in IMG/M
3300028129	Seawater microbial communities from Monterey Bay, California, United States - 42D	Environmental	Open in IMG/M
3300028419	Seawater microbial communities from Monterey Bay, California, United States - 30D	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031597	Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ASMM170b_01575050	2100351011	Coastal Water And Sediment	MKNRKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLLAALIAKF
DelMOSum2010_101358512	3300000101	Marine	MKNHRKNNNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
DelMOSum2010_101740652	3300000101	Marine	MKNYKKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
DelMOSum2010_101866962	3300000101	Marine	MKNHRKNTIDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
DelMOSum2010_102794602	3300000101	Marine	NLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
DelMOSum2011_101811871	3300000115	Marine	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLLAALIAKF*
DelMOSpr2010_101001331	3300000116	Marine	MKNHRKNTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF*
DelMOWin2010_100320665	3300000117	Marine	MKNHRKNTNLDHLVKGGEKIFYSACVVLACAIGGSIMLLIAALIAQF*
JGI20156J14371_100762434	3300001347	Pelagic Marine	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILVATLIAKF*
JGI20156J14371_101272641	3300001347	Pelagic Marine	KENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLLAALIAKF*
JGI20157J14317_100501975	3300001352	Pelagic Marine	MKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0066605_103268372	3300004279	Marine	LIYLNTDKNAIKMKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMILVATLIAKF*
Ga0065861_10430212	3300004448	Marine	MKNYKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0065861_10541482	3300004448	Marine	MKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIATVIAEL*
Ga0065861_10883212	3300004448	Marine	MKNHKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0066222_10187381	3300004460	Marine	NLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQYKLTAL*
Ga0066222_10211601	3300004460	Marine	NLDHLVKGGDKVFYSACVVLACCLGGSIMLLIATVIAEL*
Ga0070727_106007812	3300005590	Marine Sediment	MKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0070743_100512372	3300005941	Estuarine	MKNHKENTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF*
Ga0070742_100315494	3300005942	Estuarine	MKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF*
Ga0075466_10810883	3300006029	Aqueous	MKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAQF*
Ga0075466_11868373	3300006029	Aqueous	MKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF*
Ga0070749_100829153	3300006802	Aqueous	MKNHKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF*
Ga0075467_103557131	3300006803	Aqueous	MKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSLMLLIAALIAKF*
Ga0070750_102068662	3300006916	Aqueous	LIYLNTDNNAIKMKNHKKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0075469_100594233	3300007231	Aqueous	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF*
Ga0102822_10193885	3300007558	Estuarine	MKMKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF*
Ga0105738_10484952	3300007953	Estuary Water	MKNQRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLLAALIAQF*
Ga0102813_11606901	3300009003	Estuarine	RKNTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF*
Ga0102811_10306226	3300009024	Estuarine	ITDNNAIKMKNHRKNTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF*
Ga0102811_12546382	3300009024	Estuarine	MKNHRKNTNLNHLVKGGEKIFYSACVVLACALGGSIMLLIAALI
Ga0115566_100428583	3300009071	Pelagic Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115549_13036633	3300009074	Pelagic Marine	RHNRIMKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLLAALIAKF*
Ga0115550_12162792	3300009076	Pelagic Marine	MKNYKKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALVAQF*
Ga0115550_12596583	3300009076	Pelagic Marine	LIYLNTDNNAIKMKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF*
Ga0102814_100874461	3300009079	Estuarine	MKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIVALIAQF*
Ga0102814_107712001	3300009079	Estuarine	MKNHRKNTNLNHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0102812_106339061	3300009086	Estuarine	HRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0102812_106560811	3300009086	Estuarine	MKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLL
Ga0114995_100518285	3300009172	Marine	MKNHKENNNLDHLVKGGEKIFYSACVVLACALGGSIMLLIATVISEL*
Ga0115562_11483321	3300009434	Pelagic Marine	NRIMKNRKEYSTLDHLVKCGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115546_11526553	3300009435	Pelagic Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF*
Ga0115546_12229452	3300009435	Pelagic Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALITKF*
Ga0115546_12544542	3300009435	Pelagic Marine	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILVATLIDKF*
Ga0115546_13252101	3300009435	Pelagic Marine	NTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLLAALIAKF*
Ga0115007_109219711	3300009441	Marine	MKNHKENNNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIATVIAGL*
Ga0115563_11572002	3300009442	Pelagic Marine	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILVAALIAKF*
Ga0115560_10382201	3300009447	Pelagic Marine	NIDHLVKGGEKIFYSACVVLACCLGGSLMLLVATLFAKF*
Ga0115565_102226401	3300009467	Pelagic Marine	IMKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115569_101162481	3300009497	Pelagic Marine	MKNHRKNTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115568_100767102	3300009498	Pelagic Marine	MKNRKENTKLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115572_1001138710	3300009507	Pelagic Marine	MKHKRNTNLDDLIKNGDKVFTSACIVLACFLGGSIILLIAALIAQF*
Ga0115567_103261871	3300009508	Pelagic Marine	TNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF*
Ga0115102_109050367	3300009606	Marine	MKKLKNYQEDTHLDSLVKGGEKIFYSACVVLACALGGSIMLLIAAVIAQF*
Ga0115001_100774193	3300009785	Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLLAALIAKF*
Ga0118731_1136382381	3300010392	Marine	NTNLDHLVKGGEKVFYSACVVLACCLGGSIMILVAALIAKF*
Ga0129327_102224933	3300013010	Freshwater To Marine Saline Gradient	MKNRKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF*
Ga0129327_107298311	3300013010	Freshwater To Marine Saline Gradient	KENTNLDHLVKGGEKVFYSACVVLACCLGGSLMLLVATLIAKF*
Ga0180120_103193663	3300017697	Freshwater To Marine Saline Gradient	MKNHKENTTLDHLVKGGEKVFYSACVVLACCLGGSLMLLIAALIAQF
Ga0180120_103640592	3300017697	Freshwater To Marine Saline Gradient	MKNYKKNTNLDHLVKGGEKIFYSACVVLACALGGSI
Ga0187219_11160081	3300017751	Seawater	LKNYQEDTHLDSLVKGGEKIFYSACVVLACALGGSIMLLIAAVIAQF
Ga0181559_100706941	3300018415	Salt Marsh	MKNHKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLIAALIAQF
Ga0181559_101027685	3300018415	Salt Marsh	MKNRKENTTLDHLVKGGEKVFYSACVVLACCLGGSIMLLIAALIAQF
Ga0181558_104284193	3300018417	Salt Marsh	MKNHKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAQF
Ga0181563_107575041	3300018420	Salt Marsh	KENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLIAALIAQF
Ga0206128_10418514	3300020166	Seawater	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLLAALIAKF
Ga0206127_100085130	3300020169	Seawater	MKNHKEKTNLDHLVKGGEKIFYSACVVLACCLGGSLMLLVATLIAKF
Ga0206127_11316724	3300020169	Seawater	MKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Ga0206124_102569902	3300020175	Seawater	MKNRKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Ga0206131_103931892	3300020185	Seawater	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Ga0206130_100603662	3300020187	Seawater	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLIAALIAKF
Ga0211677_100367525	3300020385	Marine	MKNHKKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0222717_100117141	3300021957	Estuarine Water	MKKLKNYQEDTHLDSLVKGGEKIFYSACVVLACALGGSIMLLIAAVIAQF
Ga0222717_100581045	3300021957	Estuarine Water	MKNYKKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0222717_101000995	3300021957	Estuarine Water	MKNHKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0222717_101621674	3300021957	Estuarine Water	MKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
Ga0222717_102392973	3300021957	Estuarine Water	MKKTKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0222717_105958321	3300021957	Estuarine Water	MKNQRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0222716_1000250723	3300021959	Estuarine Water	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
Ga0222716_101063766	3300021959	Estuarine Water	ENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
Ga0222715_100230641	3300021960	Estuarine Water	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMILIAALIAKF
Ga0212022_10442043	3300022164	Aqueous	DTDKNVIKMKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF
Ga0196887_10264825	3300022178	Aqueous	IKMKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF
Ga0196887_10838283	3300022178	Aqueous	TLDHLVKGGEKIFYSACVVLACCLGGSLMLLVAALIAKF
Ga0224513_101285171	3300022220	Sediment	SKRNKKLKIKMKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
Ga0224506_102558402	3300022221	Sediment	MKNHRKNNNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
(restricted) Ga0233404_100222221	3300022913	Seawater	MKNQRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLLAALIAQF
Ga0255783_103117571	3300022923	Salt Marsh	MKNHKENTTLDHLVKGGEKIFYSACVVLACCLGGSIM
(restricted) Ga0233409_100923614	3300022938	Seawater	LDHLVKGGEKIFYSACVVLACALGGSIMLLLAALIAQF
(restricted) Ga0233406_100971952	3300023085	Seawater	LNTDKNVIKMKNQRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLLAALIAQF
(restricted) Ga0233411_100990524	3300023112	Seawater	KNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
(restricted) Ga0233403_101782251	3300023271	Seawater	DHLVKGGEKVFYSACVVLACCLGGSIMILVATLIAKF
Ga0228685_10784581	3300023701	Seawater	MKNHRKNNNFDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
(restricted) Ga0255040_100835313	3300024059	Seawater	MKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
(restricted) Ga0255040_102529614	3300024059	Seawater	MKNHKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIATLIAKF
(restricted) Ga0255040_103980692	3300024059	Seawater	MKNQRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLL
Ga0228669_10730232	3300024185	Seawater	MKNHRKNNKLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
Ga0228671_10133365	3300024334	Seawater	MKNHRKNNKLDHLVKGGEKVFYSACVVLACALGGSI
Ga0228632_11141861	3300024420	Seawater	HLVKGVEKVFYSACVVLACALGGSIMLLIAALIAQF
Ga0208148_10022641	3300025508	Aqueous	MKNRKENTTLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF
Ga0208303_10095697	3300025543	Aqueous	AIKMKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF
Ga0208303_11178401	3300025543	Aqueous	KRNKKLKIIMKNRKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF
Ga0209405_11584992	3300025620	Pelagic Marine	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMLLVAALIAKF
Ga0209504_10494663	3300025621	Pelagic Marine	MKNYKKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAKF
Ga0209504_11074312	3300025621	Pelagic Marine	KENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Ga0209504_11219873	3300025621	Pelagic Marine	DHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0209194_10117061	3300025632	Pelagic Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALI
Ga0209833_101497310	3300025641	Pelagic Marine	MKNRKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILVATLIAKF
Ga0208643_11413102	3300025645	Aqueous	MKNHKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF
Ga0208134_10798103	3300025652	Aqueous	MKNRKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF
Ga0208545_11067343	3300025806	Aqueous	MKNRKENTTLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAQF
Ga0209193_10477131	3300025816	Pelagic Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAK
Ga0209119_12523491	3300025860	Pelagic Marine	KENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Ga0209533_13343573	3300025874	Pelagic Marine	LVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0209309_101403891	3300025881	Pelagic Marine	LDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALIAKF
Ga0208544_102667373	3300025887	Aqueous	IMKNRKENTTLDHIVKGGEKIFYSACVVLACCLGGSIMLLVAALIAKF
Ga0209630_101594934	3300025892	Pelagic Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIAALITKF
Ga0208673_10571023	3300027192	Estuarine	KMKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
Ga0208437_10349941	3300027525	Estuarine	AIKMKNHKENTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
Ga0208437_11551151	3300027525	Estuarine	MKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAA
Ga0209710_10310374	3300027687	Marine	MKNRKENTNLDHLVKGGEKIFYSACVVLACCLGGSIMLLLAALIAKF
Ga0208304_102361203	3300027751	Estuarine	NNAIKMKNHKENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
Ga0208304_103582492	3300027751	Estuarine	MKNHKENTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
Ga0209192_102261762	3300027752	Marine	MKNHKENNNLDHLVKGGEKIFYSACVVLACALGGSIMLLIATVISEL
Ga0208305_103599991	3300027753	Estuarine	KNHKENTNLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
Ga0208671_100811635	3300027757	Estuarine	MKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIA
Ga0208671_101075981	3300027757	Estuarine	NKLKIKMKNHRENTNLDHLVKGGEKVFYSACVVLACCLGGSIMILIAALIAKF
(restricted) Ga0255041_101572364	3300027837	Seawater	VIKMKNHRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
(restricted) Ga0233415_102376721	3300027861	Seawater	MKNHRKNTNLDHLVKGGEKVFYSACVVLACALGGGIMLLIAALIAQF
(restricted) Ga0255055_103265393	3300027881	Seawater	KLKIKMKNHRKNTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
Ga0209713_103378462	3300027883	Marine	MKNHKENNNLDHLVKGGEKIFYSACVVLACCLGGSIMLLIATVIAGL
(restricted) Ga0233413_100090304	3300027996	Seawater	MKKTKENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIVALIAQF
(restricted) Ga0233413_101503701	3300027996	Seawater	MKNHRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLIAALIAQF
(restricted) Ga0233413_103904943	3300027996	Seawater	VIKMKNQRENTNLDHLVKGGEKIFYSACVVLACALGGSIMLLLAALIAQF
Ga0228634_10256715	3300028129	Seawater	MKNHRKNNKLDHLVKGGEKVFYSACVVLACALGGSIMLLI
Ga0228625_10448981	3300028419	Seawater	HLITDKNVIKMKNHRKNNKLDHLVKGGEKVFYSACVVLACALGGSIMLLIAALIAQF
Ga0307488_104499732	3300031519	Sackhole Brine	MKNHKENNNLDHLVKGGDKIFYSACVVLACALGGSIMLLIATVIAEL
Ga0302116_11385661	3300031597	Marine	MKNHKENNNLDHLVKGGEKIFYSACVVLACALGGSIMLLIATVIAEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters