Scaffold Ga0209713_10000829

Overview

Basic Information

• Taxon OID: 3300027883
• Scaffold ID: Ga0209713_10000829
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17738
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8697
  • Long. (^o): 8.1122
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006002	Metagenome / Metatranscriptome	384	Y
F014383	Metagenome / Metatranscriptome	263	Y
F020796	Metagenome / Metatranscriptome	222	Y
F024892	Metagenome / Metatranscriptome	204	Y
F064116	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209713_1000082917	F014383	N/A	MANEIYDSTWWGNTIDTASSIGTSTDMIQGQFNMNDRQEVEAVKCLADTIHKIGLQNI
Ga0209713_1000082925	F006002	N/A	MAKAVYCKCKNTYSIDCDKDGKKCKSDEYWKQGIGSIYKETEE
Ga0209713_1000082928	F020796	N/A	MIRETLELLRDKEWLINDMDINIAKGLHELPSSFKEVKTIIKRKKLTNGR
Ga0209713_100008295	F064116	N/A	MKDLVDFKNYQIEALQNKVSKQDRQISTLETYIFELIDKDCPEEYKGIVKNQLLKTD
Ga0209713_100008298	F024892	N/A	MSYKRKKYSSSLHTVEYTDTYTEEMDKEGLTILKWSMLDSPDILGSGKYFMESEPVFILDEVLRKERINAFIMIGYVSKTYGDKTAIPSNSGHRVGKAIKVRCINKIKRFKIIKGLIQYGIERIQVSNEFIYFDTDNYLKEPLFICF