NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209713_10000465

Scaffold Ga0209713_10000465


Overview

Basic Information
Taxon OID3300027883 Open in IMG/M
Scaffold IDGa0209713_10000465 Open in IMG/M
Source Dataset NameMarine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22845
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (17.02%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean
CoordinatesLat. (o)78.8697Long. (o)8.1122Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019651Metagenome / Metatranscriptome228Y
F033501Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0209713_1000046513F019651N/AMTTLEKFQEEANIKFIQTPSLADVEIGELNTADGYELFYITQDVQNLNYENEVFYYKPNFDSIMSEIRITMHPQDPVNVCVYDIEDWFDEYDMLNYLESEMDEESFEAFTNEEE
Ga0209713_100004653F033501N/AMNAIEFINEMDYLAQVHFAEFGYDTCSYEEKQAVIKLLLHNTNK

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