NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209590_10098869

Scaffold Ga0209590_10098869


Overview

Basic Information
Taxon OID3300027882 Open in IMG/M
Scaffold IDGa0209590_10098869 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1739
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F031613Metagenome / Metatranscriptome182Y
F070523Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209590_100988691F031613AGGAGMPITISLSPLNMDGSASNFVYAIGTLTFSGNYPTGGDTLDFT
Ga0209590_100988692F000696AGGAMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRAIGNAGGGGFIQDDALLVVTAITQTDTSVQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLSQHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAIRREQQSSRRRRPFSARSGYTPF
Ga0209590_100988693F070523N/AMRCANVKSDKVSLFPDERAAIHAELGSILKGGDPAEILLVIILFLALRPPSRRKASKKKRQP
Ga0209590_100988694F000739GAGGLHIWLKGILAAAISGAAGGILTGFAAVGIDPQHFNLQSGIGATMRIGAAAAFINAVIGVAAYLQKSPLPTE
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