NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10125839

Scaffold Ga0209465_10125839


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10125839 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1265
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000570Metagenome / Metatranscriptome1017Y
F013668Metagenome269Y
F075359Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_101258391F000570N/AVAIAILPLVGAADIADAMTYKDIAGQWCGDVTDYVFTPNTLTVKFHDGRPASVFKITKYTYTNDSVRIDWLNSAGKESVTVFAEFIGNTTMAQQQEGDKPRRPFHRC
Ga0209465_101258392F075359GGAMSRDPEEERFARADSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0209465_101258393F013668GGAGGMSQVLEWRELLESAHKQLQDAMTNLITNKNYSEAERRLHAVDQLMVDLIEDMGGNVIRSGLWT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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