NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F075359

Metagenome Family F075359

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075359
Family Type Metagenome
Number of Sequences 119
Average Sequence Length 43 residues
Representative Sequence MSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Number of Associated Samples 73
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 73.73 %
% of genes near scaffold ends (potentially truncated) 36.13 %
% of genes from short scaffolds (< 2000 bps) 94.96 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.311 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.689 % of family members)
Environment Ontology (ENVO) Unclassified
(42.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.622 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.17%    β-sheet: 0.00%    Coil/Unstructured: 45.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF03401TctC 3.36
PF00589Phage_integrase 1.68
PF00027cNMP_binding 1.68
PF13683rve_3 0.84
PF07859Abhydrolase_3 0.84
PF01527HTH_Tnp_1 0.84
PF07369DUF1488 0.84
PF12802MarR_2 0.84
PF11154DUF2934 0.84
PF01391Collagen 0.84
PF04392ABC_sub_bind 0.84
PF13356Arm-DNA-bind_3 0.84
PF04226Transgly_assoc 0.84
PF05532CsbD 0.84
PF13545HTH_Crp_2 0.84
PF00248Aldo_ket_red 0.84
PF14659Phage_int_SAM_3 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 3.36
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 0.84
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.84
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.84
COG3237Uncharacterized conserved protein YjbJ, UPF0337 familyFunction unknown [S] 0.84


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A77.31 %
All OrganismsrootAll Organisms22.69 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459014|G1P06HT01ALXL1Not Available600Open in IMG/M
3300004633|Ga0066395_10219336Not Available1005Open in IMG/M
3300004633|Ga0066395_10615807Not Available637Open in IMG/M
3300005332|Ga0066388_102179148All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis999Open in IMG/M
3300005332|Ga0066388_105779657Not Available626Open in IMG/M
3300005332|Ga0066388_106645283Not Available583Open in IMG/M
3300005434|Ga0070709_10843152Not Available722Open in IMG/M
3300005437|Ga0070710_10611314Not Available760Open in IMG/M
3300005471|Ga0070698_102034486Not Available528Open in IMG/M
3300005536|Ga0070697_101263233Not Available658Open in IMG/M
3300005764|Ga0066903_100520161All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum argentinense2025Open in IMG/M
3300005764|Ga0066903_102745747Not Available955Open in IMG/M
3300005764|Ga0066903_103720822All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei820Open in IMG/M
3300005764|Ga0066903_104755175Not Available722Open in IMG/M
3300005764|Ga0066903_106140324Not Available628Open in IMG/M
3300005764|Ga0066903_106775270Not Available595Open in IMG/M
3300005764|Ga0066903_106808165Not Available594Open in IMG/M
3300006052|Ga0075029_100641246All Organisms → cellular organisms → Bacteria → Proteobacteria713Open in IMG/M
3300006057|Ga0075026_100155360All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1177Open in IMG/M
3300006163|Ga0070715_10905464Not Available543Open in IMG/M
3300006174|Ga0075014_100311649Not Available833Open in IMG/M
3300006175|Ga0070712_100978841Not Available731Open in IMG/M
3300006755|Ga0079222_10759789Not Available782Open in IMG/M
3300006806|Ga0079220_10944604Not Available676Open in IMG/M
3300006854|Ga0075425_102974168Not Available519Open in IMG/M
3300010048|Ga0126373_10571478Not Available1180Open in IMG/M
3300010048|Ga0126373_10576404Not Available1175Open in IMG/M
3300010048|Ga0126373_11410686Not Available762Open in IMG/M
3300010048|Ga0126373_11877113Not Available662Open in IMG/M
3300010358|Ga0126370_11554690Not Available631Open in IMG/M
3300010361|Ga0126378_10727104Not Available1104Open in IMG/M
3300010361|Ga0126378_12228427Not Available625Open in IMG/M
3300010376|Ga0126381_100651251Not Available1503Open in IMG/M
3300010376|Ga0126381_101366566All Organisms → cellular organisms → Bacteria1024Open in IMG/M
3300012202|Ga0137363_11631529All Organisms → cellular organisms → Bacteria → Proteobacteria537Open in IMG/M
3300012211|Ga0137377_11069814Not Available737Open in IMG/M
3300012948|Ga0126375_10706334Not Available786Open in IMG/M
3300016270|Ga0182036_10709602Not Available814Open in IMG/M
3300016270|Ga0182036_11085107Not Available662Open in IMG/M
3300016294|Ga0182041_12263636Not Available508Open in IMG/M
3300016319|Ga0182033_10630674Not Available933Open in IMG/M
3300016319|Ga0182033_11082272Not Available715Open in IMG/M
3300016319|Ga0182033_11420797Not Available625Open in IMG/M
3300016357|Ga0182032_10550264All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae955Open in IMG/M
3300016387|Ga0182040_10067210All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2307Open in IMG/M
3300016387|Ga0182040_10222031Not Available1403Open in IMG/M
3300016387|Ga0182040_11355624Not Available601Open in IMG/M
3300016387|Ga0182040_11667943All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria544Open in IMG/M
3300018058|Ga0187766_11143281Not Available561Open in IMG/M
3300020581|Ga0210399_10622260Not Available892Open in IMG/M
3300020581|Ga0210399_11054176Not Available652Open in IMG/M
3300021560|Ga0126371_10095801All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2945Open in IMG/M
3300021560|Ga0126371_10196608Not Available2109Open in IMG/M
3300021560|Ga0126371_10239125Not Available1926Open in IMG/M
3300021560|Ga0126371_10501595Not Available1362Open in IMG/M
3300021560|Ga0126371_10564817Not Available1286Open in IMG/M
3300025906|Ga0207699_11283164Not Available542Open in IMG/M
3300025916|Ga0207663_11360583All Organisms → cellular organisms → Bacteria → Proteobacteria572Open in IMG/M
3300026910|Ga0207840_1021115Not Available647Open in IMG/M
3300026990|Ga0207824_1003936All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1749Open in IMG/M
3300027070|Ga0208365_1025695Not Available767Open in IMG/M
3300027071|Ga0209214_1017846Not Available897Open in IMG/M
3300027874|Ga0209465_10125839Not Available1265Open in IMG/M
3300027911|Ga0209698_10302593Not Available1265Open in IMG/M
3300027915|Ga0209069_10842696Not Available551Open in IMG/M
3300031231|Ga0170824_125616646Not Available1368Open in IMG/M
3300031474|Ga0170818_101268598Not Available1025Open in IMG/M
3300031543|Ga0318516_10075958Not Available1869Open in IMG/M
3300031545|Ga0318541_10088493All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1648Open in IMG/M
3300031545|Ga0318541_10335685Not Available844Open in IMG/M
3300031545|Ga0318541_10603573Not Available614Open in IMG/M
3300031564|Ga0318573_10155804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1199Open in IMG/M
3300031572|Ga0318515_10393266Not Available742Open in IMG/M
3300031572|Ga0318515_10632630Not Available568Open in IMG/M
3300031572|Ga0318515_10767863Not Available509Open in IMG/M
3300031573|Ga0310915_10123432All Organisms → cellular organisms → Bacteria → Proteobacteria1769Open in IMG/M
3300031679|Ga0318561_10160337Not Available1210Open in IMG/M
3300031718|Ga0307474_10386352Not Available1088Open in IMG/M
3300031723|Ga0318493_10830721Not Available521Open in IMG/M
3300031724|Ga0318500_10073875All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1503Open in IMG/M
3300031744|Ga0306918_10121381All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1894Open in IMG/M
3300031744|Ga0306918_11204234Not Available585Open in IMG/M
3300031754|Ga0307475_10347939All Organisms → cellular organisms → Bacteria1191Open in IMG/M
3300031754|Ga0307475_10460144All Organisms → cellular organisms → Bacteria → Proteobacteria1022Open in IMG/M
3300031754|Ga0307475_10821765Not Available737Open in IMG/M
3300031754|Ga0307475_11033572Not Available645Open in IMG/M
3300031764|Ga0318535_10311603Not Available704Open in IMG/M
3300031770|Ga0318521_11007222Not Available511Open in IMG/M
3300031771|Ga0318546_10992736Not Available591Open in IMG/M
3300031820|Ga0307473_11311231Not Available542Open in IMG/M
3300031823|Ga0307478_10536182All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860977Open in IMG/M
3300031823|Ga0307478_10842242Not Available768Open in IMG/M
3300031879|Ga0306919_11327651Not Available544Open in IMG/M
3300031890|Ga0306925_10703667Not Available1057Open in IMG/M
3300031890|Ga0306925_11492245Not Available662Open in IMG/M
3300031890|Ga0306925_11730236Not Available602Open in IMG/M
3300031910|Ga0306923_12241700Not Available546Open in IMG/M
3300031910|Ga0306923_12449568Not Available516Open in IMG/M
3300031912|Ga0306921_12146870Not Available590Open in IMG/M
3300031912|Ga0306921_12557376Not Available528Open in IMG/M
3300031942|Ga0310916_11146032Not Available644Open in IMG/M
3300031942|Ga0310916_11460713Not Available558Open in IMG/M
3300031947|Ga0310909_10981068All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300031954|Ga0306926_10242881All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2232Open in IMG/M
3300031954|Ga0306926_10377934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1750Open in IMG/M
3300031954|Ga0306926_11872954Not Available678Open in IMG/M
3300031959|Ga0318530_10479502Not Available516Open in IMG/M
3300031962|Ga0307479_11929681Not Available540Open in IMG/M
3300032059|Ga0318533_10224178Not Available1352Open in IMG/M
3300032059|Ga0318533_11167815Not Available563Open in IMG/M
3300032066|Ga0318514_10073336All Organisms → cellular organisms → Bacteria1697Open in IMG/M
3300032067|Ga0318524_10382740Not Available733Open in IMG/M
3300032180|Ga0307471_101991718Not Available728Open in IMG/M
3300032180|Ga0307471_102417932All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium664Open in IMG/M
3300032180|Ga0307471_103221756Not Available578Open in IMG/M
3300032261|Ga0306920_100502930All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1798Open in IMG/M
3300032261|Ga0306920_103967900Not Available538Open in IMG/M
3300032261|Ga0306920_104420942Not Available504Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil22.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil21.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.61%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil12.61%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil10.08%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.72%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds4.20%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.68%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.68%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.68%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.68%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.84%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.84%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459014Litter degradation PV2EngineeredOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026910Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)EnvironmentalOpen in IMG/M
3300026990Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)EnvironmentalOpen in IMG/M
3300027070Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)EnvironmentalOpen in IMG/M
3300027071Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2PV_042228102170459014Switchgrass, Maize And Mischanthus LitterMGRDPDEERFARQDGERYSGWSSALTIIAILAILAIVFLVYQLKYSIS
Ga0066395_1021933623300004633Tropical Forest SoilMSRDPEEERFARGDNQRYSGWSSAITIVVIVIILSVLLFYYLK*
Ga0066395_1061580723300004633Tropical Forest SoilMSRDPEEERFARADSQRYSGWSSAITIAVIVIVLGIVFLVYYLK*
Ga0066388_10217914833300005332Tropical Forest SoilGKFMSRDPEEERFARGDNQRYSGWSSATTIVVIVIILSVVLFYYLK*
Ga0066388_10577965713300005332Tropical Forest SoilMTPEENSNEERFARQDSRRYSGWSNAITIAVIVIILCMVILVYQLKH*
Ga0066388_10664528323300005332Tropical Forest SoilMSRDPEEERFARQDRERYSGWTSAFTIIAILAILAIAFVVYKLKY*
Ga0070709_1084315213300005434Corn, Switchgrass And Miscanthus RhizosphereMSRDPEEERFARQDSGRYSGWASAFTIAVIVIVLCIVFLAYYLK*
Ga0070710_1061131423300005437Corn, Switchgrass And Miscanthus RhizosphereMSRDPEEERFARGNSRRYSGWSSAFVIVAILVVLAIVILVYQLK*
Ga0070698_10203448613300005471Corn, Switchgrass And Miscanthus RhizosphereMSRDPEEERFARQNSSGYSGWASAFTIAVIVIVLCIVFLVYYLK*
Ga0070697_10126323313300005536Corn, Switchgrass And Miscanthus RhizosphereDPEEERFARQNRSGYSGWASAFTIAVIVIVLCIVFLVYYLK*
Ga0066903_10052016143300005764Tropical Forest SoilMSRDPEEERFARQDRERYSGWTSAFTIVAILAILAIALVIYQLKY*
Ga0066903_10274574743300005764Tropical Forest SoilMSRDPEEERFARGDNQRYSGWSSATTIVVIVIILSVVLFYYLK*
Ga0066903_10372082233300005764Tropical Forest SoilMSRDPEERFARQDRERYSGWSSAFTVIAIVAILAIVFVAYHLKY*
Ga0066903_10475517523300005764Tropical Forest SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK*
Ga0066903_10614032423300005764Tropical Forest SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLIYYLK*
Ga0066903_10677527023300005764Tropical Forest SoilMSRDPEEERFARGDSRRYSGWSSAITIAVIVIVLGIVFLVYYLK*
Ga0066903_10680816513300005764Tropical Forest SoilMGHDSEEERFARQDNRRYSGWASAFTIAVIVIVLGIVFLVYQLKY*
Ga0075029_10064124613300006052WatershedsMSRDPEEERFARQDSGRYSGWASAFTIAVIVIVLCIVFLVYYLK*
Ga0075026_10015536013300006057WatershedsMSRDPEEERFARQNSGRYSGWASAFTIAVIVIVLCIV
Ga0070715_1090546423300006163Corn, Switchgrass And Miscanthus RhizosphereMSRDPEEERFARQDSHRYSGWSSAFAIAAIVIVLMIVFLVYYLK*
Ga0075014_10031164933300006174WatershedsMSRDPEEERFARQNSRGYSGWASAFTIAVIVIVLCIVFLVYYLK*
Ga0070712_10097884113300006175Corn, Switchgrass And Miscanthus RhizosphereMSRDPEEERFARQNSTGYSGWASAFTIAVIVIVLCIVFLVYYLK*
Ga0079222_1075978923300006755Agricultural SoilLGPKVMSRDPEEERFAREDNRPYSGWSSAFVIVAILVVLAIVILVYQLK*
Ga0079220_1094460423300006806Agricultural SoilMSRDPEEERFARADSQRYSGGSSAITIAVIVIVLGIVFLVYYLK*
Ga0075425_10297416813300006854Populus RhizosphereMSRDPEEERFARQNSRGYSGWASAFTIAVIVIALCIVFLVYYLK*
Ga0126373_1057147823300010048Tropical Forest SoilMSRDPEEERFARADSQRYSGWSSAITIAVIVIVLGIVLLVYYLK*
Ga0126373_1057640423300010048Tropical Forest SoilMSRDPEEERFARGDSQRYSGWSSAITIAVILIVLGIVFLVYYLK*
Ga0126373_1141068623300010048Tropical Forest SoilMSRDPEEERFARGNSQRYSSWSSAITIAVIVIVLGIVFLVYYLK*
Ga0126373_1187711323300010048Tropical Forest SoilMSRDPEEERFARGDNQRYSGWSSATTIVVIVIILSVLLFYYLK*
Ga0126370_1155469013300010358Tropical Forest SoilMNRDPEEERFARGDSQRYSGWSSAITTAVIVIVLGIVFLVYYLK*
Ga0126378_1072710423300010361Tropical Forest SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVLLVYYLK*
Ga0126378_1222842713300010361Tropical Forest SoilMNRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK*
Ga0126381_10065125133300010376Tropical Forest SoilARADSQRYSGWSSAITIAVIVIVLGIVFLVYYLK*
Ga0126381_10136656613300010376Tropical Forest SoilMSRDPEEERFARGDSQRYSGWSSAITIAVILIVLAIVFLVYYLK*
Ga0137363_1163152933300012202Vadose Zone SoilPNEARFARQDQRRYSGWSSAIAIIAILIVLAIVFLVYQLKH*
Ga0137377_1106981433300012211Vadose Zone SoilMSRDPKEERFARQDSHRYSGWSSVFAIAVIVIVLMIVFFVYYL
Ga0126375_1070633423300012948Tropical Forest SoilMNRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIIFLVFY*
Ga0182036_1070960223300016270SoilMSRDPEEERFARGDSQRYSGRSSAITIAVIVIVLGIVFLVYYLK
Ga0182036_1108510723300016270SoilLMSRDPPEERFAREDSRRYSGRSSAFVIVVIVIVLGIFLVYYLK
Ga0182041_1226363623300016294SoilVSRDPEEERFARGDSQRYSGWSSAITIAVIVLVLGIVFLIYYLK
Ga0182033_1063067413300016319SoilMSRDPEEERFARGDSQRYSRWSSAITIAVIVIVLGIVFLVYYLK
Ga0182033_1108227223300016319SoilMSRDPEERFARQDRERYSGWSSAFTIIAIVAILAIVFVVYHLKY
Ga0182033_1142079723300016319SoilVSRDPEEERFARGDSQRYSGWSSAITIAVIVIILGIVFLIYYLK
Ga0182032_1055026413300016357SoilMCRDPEEERFARGNSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0182040_1006721033300016387SoilMSRDPPEERLAREDSRRYSGRSSAFVIVVIVIVLGIFLVYYLK
Ga0182040_1022203143300016387SoilMSRDPEEERFARGNSQRYSGRSSAITIAVIVIVLGIVFLVYYLK
Ga0182040_1135562433300016387SoilMGRDREEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0182040_1166794313300016387SoilPSEEQFGRQDSRRYSGWTTAITIAVIVIVLGMVILVYQLRY
Ga0187766_1114328113300018058Tropical PeatlandEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0210399_1062226033300020581SoilFMSRDPEEERFARQNSSGYSGWASAFTIAVIVIVLCIVFLVYYLK
Ga0210399_1105417613300020581SoilMSRDPEEERLARGDNRRYSGWSSAFVIVAILVVLAIVILVNQLK
Ga0126371_1009580153300021560Tropical Forest SoilMSRDPEEERFARADSQRYSGWSSAITIAVIVIVLGIVFLV
Ga0126371_1019660833300021560Tropical Forest SoilMSRDPEEERFARGNSQRYSSWSSAITIAVIVIVLGIVFLVYYLK
Ga0126371_1023912543300021560Tropical Forest SoilMSRDPEEERFARGDNQRYSGWSSAITIVVIVIILSVLLFYYLK
Ga0126371_1050159533300021560Tropical Forest SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVMALGIVLLVYYLK
Ga0126371_1056481733300021560Tropical Forest SoilMSRDPEEERFARQDRERYSGWTSAFTIIAILAILAIAFVVYKLKY
Ga0207699_1128316413300025906Corn, Switchgrass And Miscanthus RhizosphereMSPDREEDHYARQDVRGYSGWSSAITIAVIVIVLGIVV
Ga0207663_1136058313300025916Corn, Switchgrass And Miscanthus RhizosphereMSRDPEEERFARQNSSGYSGWASAFTIAVIVIVLCIVFLVY
Ga0207840_102111513300026910Tropical Forest SoilMSRDPEEERFARGDRQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0207824_100393613300026990Tropical Forest SoilMSRDPEEERFARADSQRYSGWSSAITIAAFVIVLGIVFLVYHLRY
Ga0208365_102569513300027070Forest SoilMSRDPEEERFARQNSRGYSGWASAFTIAVIVIVLCIVFLVYYL
Ga0209214_101784633300027071Forest SoilDPEEERFAREDNRPYSGWSSAFVIVAILVVLAIVILVYQLK
Ga0209465_1012583923300027874Tropical Forest SoilMSRDPEEERFARADSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0209698_1030259313300027911WatershedsMSGDPEEERFARQNSRQYSGWASAFTIAVIVIVLCIVFLVYY
Ga0209069_1084269623300027915WatershedsMSRDPEEERFARREDGRYSAWSSAIAIVVIVIVLGIVFLVYYLK
Ga0170824_12561664633300031231Forest SoilMSRDPEEERFARREDGRYSAWSFAIAIVVIVIVLGIVFLVYYLK
Ga0170818_10126859813300031474Forest SoilMSRDPEEERFARQDSGRYSGWASAFTIAVIVIVLCIVFLAY
Ga0318516_1007595853300031543SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0318541_1008849313300031545SoilMSRDPEEERFARGNSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0318541_1033568513300031545SoilMSRDPEERFARQDRERYSGWSSAFTIIAIVAILAIVF
Ga0318541_1060357323300031545SoilMSRDPEEERFARGDSQRYSGWSSAITIAVILIVLGIVFLVYYLK
Ga0318573_1015580433300031564SoilRFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0318515_1039326623300031572SoilDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0318515_1063263013300031572SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLDYYLK
Ga0318515_1076786323300031572SoilMSRDPEEERFARGNSQRYSGWSSAITIAVIVIVLGIVCLVYYLK
Ga0310915_1012343223300031573SoilMSRDPEERFARQDRERYSGWSSAFTIIAIVAILAIVFVAYHLKY
Ga0318561_1016033713300031679SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVFGIVFLVYYLK
Ga0307474_1038635233300031718Hardwood Forest SoilMSRDPEEERFARQNSRGYSGWASAFTIAVIVIVLCIVFLVYYLK
Ga0318493_1083072113300031723SoilMSRDPEERFARQDRERYSGWSSAFTIIAIVAILAIVFVAYHLK
Ga0318500_1007387513300031724SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYFLK
Ga0306918_1012138113300031744SoilMSDDPEEERFARQDSGRYSGWSSAFTIAVIVIVLSIVFLVYYLK
Ga0306918_1120423413300031744SoilVSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLIYYLK
Ga0307475_1034793913300031754Hardwood Forest SoilTTFMSRDPEEERFARQNSRGYSGWASAFTIAVIVIVLCIVFLVYYLK
Ga0307475_1046014413300031754Hardwood Forest SoilMSRDPEEERFARQNSSGYSGWAFAFTIAVIVIVLCIVFLVYYLK
Ga0307475_1082176513300031754Hardwood Forest SoilMSRDPEEERFAREDSRRYSGWSSAITIVAILVVLAIVFLVYQ
Ga0307475_1103357223300031754Hardwood Forest SoilMSRDPEEERFARQNSRGYSGWASAFTIAVIVIVLCIVF
Ga0318535_1031160323300031764SoilMSRDPEEERFARGDRQRYSGWSSAITIAVIVIVLGIVFLV
Ga0318521_1100722223300031770SoilMSREPEEERFARQDSRRYSGWTSAVVIAVTVIVLGIVVVYYAK
Ga0318546_1099273613300031771SoilVSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLIYYPK
Ga0307473_1131123123300031820Hardwood Forest SoilLMSRDPEEERFARQDSHRYSGWSSAFAIAAIVIVLMIVFLVYYLK
Ga0307478_1053618213300031823Hardwood Forest SoilMSRDPEEERFARGNGRRYGGWSSAFVIVAILVVLAIVILVYQLKH
Ga0307478_1084224213300031823Hardwood Forest SoilMSRDPEEERFARQNSRGYSGWASAFTIAVIVIVLCIVFLV
Ga0306919_1132765113300031879SoilGPDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0306925_1070366723300031890SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLSVFLVYYLK
Ga0306925_1149224533300031890SoilMSRDPEEERFARGDSQRYSGRSSAITIAVIVIVLGIVFLIYYPK
Ga0306925_1173023623300031890SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLVVFLVYYIK
Ga0306923_1224170013300031910SoilMSRDPPEERFAREDSRRYSGQSPAFVIVVNVIVLGIFLVYYLK
Ga0306923_1244956833300031910SoilRVSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLIYYLK
Ga0306921_1214687013300031912SoilMSPEDSNEERLARQDSRRYSGWTSAITIAVIVIVLVI
Ga0306921_1255737623300031912SoilVSRDPEEERFARGDSQRYSGWSSAITIAVIVIVVGIVFLIYYLK
Ga0310912_1071591013300031941SoilMNPDPKDSSEDQYGRQDSRPYSGWSSAITIAVIVIVLGIVVLV
Ga0310916_1114603223300031942SoilMSRDPPEERFAREDSRRYSGQSPAFVIVVIVIVLGI
Ga0310916_1146071323300031942SoilMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVY
Ga0310909_1098106823300031947SoilLENLMSDDPEEERFARQDSGRYSGWSSAFTIAVIVIVLSIVFLVYYLK
Ga0306926_1024288143300031954SoilMSRDPPEERFAREDSRRHSGRSSAFVIVVIVIVLGIFLDYLK
Ga0306926_1037793443300031954SoilMSDDPEEERFARQDSGRYSGWSSAFTIAVIVIVLSIVFL
Ga0306926_1187295423300031954SoilMSRDPEEERFARGDSQRYSGWCSAITIAVIVIVLGIVFLVYYLK
Ga0318530_1047950223300031959SoilLMSRDPPEERFAREDSRRHSGRSSAFVIVVIVIVLGIFLDYLK
Ga0307479_1192968113300031962Hardwood Forest SoilMSRDPEEERFARQNSRRYSGWASAFTIAVIVIVLCIVFLVYYLK
Ga0318533_1022417813300032059SoilMSRDPEEERFARGNSQRYSGWSSAITIAVIVIVLG
Ga0318533_1116781513300032059SoilFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0318514_1007333613300032066SoilEEDSYEKRFARQDSRRYSGWSNAIAIIAILIVLAMVFLVYQLK
Ga0318524_1038274013300032067SoilMSRDPEEERFARGDSQRYSGWSSAITTAVIVIVLGIVFLVYYLK
Ga0307471_10199171813300032180Hardwood Forest SoilFLIGLVSIPIPHKAYRERNTTFMSRDPEEERFARQNSRRYSGWASAFTIAVIVIVLCIVFLVYYLK
Ga0307471_10241793223300032180Hardwood Forest SoilERCARQNSRRYSGWASAFTIAVIVIVLCIVFLVYYLK
Ga0307471_10322175623300032180Hardwood Forest SoilRKAYREQTRFMSRDPEEERFARQNSSGYSGWAFAFTIAVIVIVLCIVFLVYYLK
Ga0306920_10050293033300032261SoilMSRDPPEERFAREDSRRYSGQSPAFVIVVIVIVLGIFLVYYLK
Ga0306920_10396790023300032261SoilENLMSRDPEEERFARGDSQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0306920_10442094223300032261SoilGRQDDRPYSGWDSAITIAVIVIVLSIVVLVYQLKY


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