Scaffold Ga0209465_10113664

Overview

Basic Information

• Taxon OID: 3300027874
• Scaffold ID: Ga0209465_10113664
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1332
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F035917	Metagenome	171	Y
F045919	Metagenome	152	Y
F077695	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_101136641	F045919	GGCGG	MRRITGSTGHPFRGDEVTEPTYDPWTSQPGQLYDWTCSACSLDWVKRSTALVVTDDIYGSRETTVYEIGYPNNISADVGLHDASGIALRNVLTSYGQQTEQSWLDFDTTYAIAQKTPGMMSGAAWYHWVGIRGVQGSTIWVANSAPGYKGVYSNVSRDDFTRLGGFSVVWLV
Ga0209465_101136642	F077695	AGG	MTDYNIGPGVADAMAQNGDEARSDERFIILDEGHKVSITFATGGVYYWYEEDNRVNRAPFPR
Ga0209465_101136643	F035917	GGAGG	MTETAAQFQFKVVYVDPGDGLIVGMEPSGGAVGNAHKVAVLFDPNEYDMLMRTDPAYLSGDKQKILASPDH
Ga0209465_101136644	F031594	N/A	PMSIRPINFNADGSIDVVFDELGHSGTIPAAEIRWTTNIDGSENHSYIALNCPDGCGASSTHPVGGGAAPVEVQQMFVNKVDHDGCACGQVAATDSGTLGESHVHLQVSRMDGPGRWQLG