Scaffold Ga0209465_10059379

Overview

Basic Information

• Taxon OID: 3300027874
• Scaffold ID: Ga0209465_10059379
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1841
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031594	Metagenome	182	Y
F035917	Metagenome	171	Y
F059390	Metagenome / Metatranscriptome	134	Y
F071508	Metagenome	122	Y
F092511	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209465_100593791	F059390	GGAG	MHVATVGSLAVTVGWLIALIVLILAILGLVGVLPSTPLVIFGLIGALAVARLL
Ga0209465_100593792	F071508	GGA	MPAQAYSWTCSVCSTCWVLQATATAFQDADIYDARYAVGTEMGYPSCVNETYGCMSPQCVVDELARHGLVARQAWCSFDQAYAIARTNTGTINPQGMYHFMALRGTQGADIAVANSAEGYMGVYSTLSRSQFNALGPVSVIYVEGRA
Ga0209465_100593793	F092511	GGA	MTDAYSDDQAAQITTLQQQQALFTQALKAAVEGHWTGAGSVEAFLYALDPGMQGALTPDPPVTESEYEAPPKA
Ga0209465_100593794	F035917	AGG	MTETEFQFKVVYVDPGNGLIVGMEPSGGAVGNAHKVAVLFDPNEYTRLMATDPAYLSSDKLHVLSAPDHT
Ga0209465_100593795	F031594	GAGG	MSIRPINFLPNGDIEAIYDELGHSGTIPAAEVKWSKNIDGTDNHSFIVLVCPDGCGGSSTHPVGGGAAPVEVQQMFVNKVDHDGCACGQVAATDSATLGESHVRLQVNRMDGPGRWALG