NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209465_10000783

Scaffold Ga0209465_10000783


Overview

Basic Information
Taxon OID3300027874 Open in IMG/M
Scaffold IDGa0209465_10000783 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14556
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (64.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031594Metagenome182Y
F059390Metagenome / Metatranscriptome134Y
F071508Metagenome122Y
F092511Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209465_1000078319F031594AGGAGMSVRPINFLPNGDVEVIYDERGHSGTIPAAEVRWTANVDGSANHNFIVLECPDGCGASSTHPVGGGAAPVEVQQMFVHKTGLEGCACGNVAAATNAVPEAHVHLNVARMDGSERWQLG
Ga0209465_1000078321F092511N/AMTDAYSDDQAAQITLLQSQQGLFTQALKAALEGRWTGAGSVEAFLYALDPNMQGALAPDPPVTESEYNAENPKA
Ga0209465_1000078322F071508N/AVTWDPTWFMPAQAYSWTCSVCSTTWVLQATDTAYQDADIYDARYAVGTEMGYPACVNETYGLMSQQCIVDELARHGLVARQAWCSFDEAYAIARTNTGTINPQGMYHFMALRGTQGADIAVANSAEGYYGVYSTLSREQFNALGPVSIVYVEGRS
Ga0209465_1000078323F059390GGAGMQITTVGSLSVTVGWLIAIVILILAILGLVGVLANTPLIIFGLIAGLAISRLL

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