Scaffold Ga0209814_10000080

Overview

Basic Information

• Taxon OID: 3300027873
• Scaffold ID: Ga0209814_10000080
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24475
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (77.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8443
  • Long. (^o): -83.9607
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013696	Metagenome	269	Y
F018752	Metagenome / Metatranscriptome	233	Y
F102100	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209814_1000008014	F018752	GGAGG	VSWHRDRDADGVPDWQEDENYADEAPIRGPGSPRSRLRSGGCALPVALLLAGTGLLARYTARRRP
Ga0209814_1000008019	F013696	AGG	MFVAVVRDAWRQYRRRPLAAAVAVVVGGLPVFLDPDDPLLAVPLALLLLVAGLLVELFLVAYLAGALDPAPPPAAAALATLRRTIGPGVRAGLLRAGYLLLALMVGLLLFGSREEGPLPRSEQTKLAIGLWPLFAIAFAFLAVLNQRVVLGGERKVRQAAGVSHRVASAHFPICLLIGLLQASGLVLASLVVEFRVLAALSILLALADPYLIGMCNSLYLSTRGDQEPADAGDGSLRPPR
Ga0209814_100000805	F102100	AGGAG	VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESTGLWAIFGGFGLIMVAAALSIAAAA