Scaffold Ga0209579_10000007

Overview

Basic Information

• Taxon OID: 3300027869
• Scaffold ID: Ga0209579_10000007
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 762105
• Total Scaffold Genes: 619
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 407 (65.75%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F000378	Metagenome / Metatranscriptome	1211	Y
F000530	Metagenome / Metatranscriptome	1047	Y
F000725	Metagenome / Metatranscriptome	918	Y
F000949	Metagenome / Metatranscriptome	823	Y
F001632	Metagenome / Metatranscriptome	660	Y
F003947	Metagenome / Metatranscriptome	460	Y
F026936	Metagenome / Metatranscriptome	196	Y
F052903	Metagenome / Metatranscriptome	142	Y
F064949	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209579_10000007128	F064949	N/A	MLLFESLSAGIMAVAVGFGAVLIVVGVYVIIVWPLTFWDLANLGLEKYSSLTNVVLWSVFAGGTMAGYWCFSGAAFKSKPKAQIPARPVRARR
Ga0209579_10000007171	F026936	GGAGG	MADGLEKDWRELCAAVTKETDSAKLISLVRELIEALDKGERSWRRTIPPSDAIATNPESA
Ga0209579_10000007283	F000530	N/A	MSDQVESAAPAVPVNENKVAERPFRVKLRGSVLVLVRLPNRRDVRAAIHQLSTTGGVIHFEKPLDEKIIVELIFHIGTSTIREKAQMLFPMWATQGWMQPFRFMDVSDAGRELLDTSLKSFLGEAKGAAAGK
Ga0209579_10000007309	F000378	GGAGG	MEDRAPVVSSTEQSSTTAAIRHHEGRGAWVLTCYGICGLALFGVLAYFFSDFIAH
Ga0209579_10000007431	F001632	AGGAG	MFLNSWKFILASTLLAIVPGLATNLFAADVKEQLAYCSYVMEQAQAQRDLLRTPVGALGMTQPETGLPLQVVAGASLGLADLRKSGLTMEAARRNCELYKATTGAQQDIQYAVPSLEREALRNRLALIEQASKALDSMMDTTAKMVEAQNATRLMLFSLQTTRIKLDADRADTQAKITALYVPELNEKPLKELVAEKQNNEVSEQKALDRLNRQNNWDVALSVGVHQQVNPVAQGAQPYGAVSVNYNFASRAINRHLDRAVDAYGEWKKAQEGDVVRNMEVLRQQLTDSVTAQEARLKSLQAEIGEIDKNLQVVGSPDTSAAFDFHNQLSAAELLLQIESGDTGFRIERLREFLAKNY
Ga0209579_10000007434	F000949	N/A	MNRSSSDAPFYLLAALCGVGAGWADVAINDLLFTALLMVAACMMLGILRPRWPWRWVVTVGIFVPLTELAAYLVLTVKPTRAQIYGSFLAFLPGIAGAYGGSVMRGVIENLRQGK
Ga0209579_10000007441	F000725	N/A	MSSLRDSREDASSMTRVLKTLRVVQWSMLASILLYAALGQALLGREGRAVDPAVSYLFSTLAVAIVGIIFVVRRTLVMRAAESLATHPDDGLSLNHWRTGYLATYALCEALALFGLVLRFLGCTFQQSALFYIGGFVLLFFFGPRQPVSAESAPGA
Ga0209579_10000007501	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEALSDMGKPALATAVNGPQPTTRIPMPSAPSIPAPQPVRAAGWEDTAKRWP
Ga0209579_10000007542	F052903	AGGAGG	MGGHPLSDIPCKLCSKPVDLSIDLSADENGNAVHEECYVKHITSSRSKTNATVTPD
Ga0209579_1000000768	F003947	GGGGG	LDFQINNETYFLSLAEDERRWLVFVESPTGSRTVPVYVDEAELEDVKLVVEDKERRKILN