NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209167_10000012

Scaffold Ga0209167_10000012


Overview

Basic Information
Taxon OID3300027867 Open in IMG/M
Scaffold IDGa0209167_10000012 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)277103
Total Scaffold Genes263 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)205 (77.95%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F001742Metagenome / Metatranscriptome643Y
F002102Metagenome / Metatranscriptome593Y
F002560Metagenome / Metatranscriptome548Y
F002814Metagenome / Metatranscriptome528Y
F003000Metagenome / Metatranscriptome514Y
F003851Metagenome / Metatranscriptome465Y
F004412Metagenome / Metatranscriptome439Y
F090964Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0209167_10000012210F002814GGAMKVNYGKRTLLNFAMTKARMLTLLIVIAHWAVAVLHLFLAAKVLSAPNNSVSWLAITLITFGHLCVCIAVWKFSDKLAGLVSVIFFFAALGADLYEHFLHASANNIFMVAPTGDWTIGFDASVFFLLGFEILGCLLGILLLGRRTRNSSQPKFANHSVLS
Ga0209167_10000012241F090964AGGAGGMAGRWKPRKEDRTDAEAVRREQQFQQDLSDILEYGTEDDFVAALKNYKPDIGKEELQESIMQFRVYVREKRGLC
Ga0209167_1000001240F000208GAGGMRIRVTTKGHLFEKRKQQHIERGYRIEDERPIPVNGLCSFIAVSEIPESDGVGDLVAQALNGMAR
Ga0209167_1000001241F002560AGGAGGMVEHNPPPSADSIRPPAIPLPIALYVSGELIFELYDGGQPSRKFSIRWDRLVPTKENEPEAQSPQASLRTRQD
Ga0209167_1000001244F004412GGAGMQDQPSNAEPALPPEQAAAKAAILSECERLAEAGITFVAVHFDGSGDEGVNEDVKCYATEDYAYEESEAQATNFSHLQEHFDALVPYGYENNCGGFGDVILNVKTRKITVERNDRFEDYTTSSYEV
Ga0209167_1000001247F001742GAGGMPDTETGNRGRNRQKIPRIGPEEAARVFAQCEHLLDSSTVFVENLRQAGFARFLAPLHQQILELAVQPDSWGERTRARLISELFAGLKGIPAEDARVEEIVQVSNVVVPCFLLELGRRRQHIEIEFPANPCDSAARFALRAGPSYPVHSVNSEQLVRLVAEAGEELVGLCYFGDQRSREHIEAQLAFTGATTDS
Ga0209167_1000001254F002102AGGAGMSKDEKENRSQPRSGALDKFEPGGESGPLNDRNEYQQRRNSLPAEQKELAEESTRFADLCQYFSQQKMDIPPSIVERVGNVSKLPAPGRIRAMKDINRELMEYLNDVGQDPGIRQ
Ga0209167_1000001257F003000N/AMKANAQLGEMHDRLIECYTQNPKEGFCDALLRLVEDPLKPRDEDGRFRVNPILLLLTLVLALALGTFLLLSFVQS
Ga0209167_100000126F003851AGGGGGMKRRRLAAATCRCIDEETKRVLRALEEAAHGRANTNDPIMERLRQCPEAFKVGEVLGKAFDSLRYAQDGSEIGDRYLPPSGTVIPPLV
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