Scaffold Ga0233415_10081161

Overview

Basic Information

• Taxon OID: 3300027861
• Scaffold ID: Ga0233415_10081161
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1403
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.6569
  • Long. (^o): -123.4875
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031662	Metagenome / Metatranscriptome	182	Y
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233415_100811611	F031662	AGGAG	MDFKIEKNIPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYKYRPNFYTPTFRDRKFTFKKETGSMYRIWR
Ga0233415_100811612	F044429	GAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNTPLTTGFGPFKTKEDADEFRAQYYYDQIVIADIVPINAVLPQSATELDIDFVPEGKVVDISSKINPHKH
Ga0233415_100811614	F103900	GGAGG	MSDHRNQIILESLYQKYIDLGYEDKEAQELAAKEFEENSN
Ga0233415_100811615	F057324	AGGAG	MNINDDLVKDWLDKFDGNSEITLLSEIANNNICVSGMIDSILAYHVGEVEIAEDFYKRMWRSQS